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...taatttcaactttatataaatggtgcatccatactgaacaaaagcattttggttcatgacatacgaatctcacttgtttcacatgattctgttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGAGGGGCCCTCATACTGTTGCTGCAGCTGCTCTTGATGTCCTAAAGCTA
species | Vitis vinifera |
transcript | Vv18s0001g06010.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|352773576|gb|FQ472358.1|FQ472358
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|352769737|gb|FQ468665.1|FQ468665
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|352768560|gb|FQ467516.1|FQ467516
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|352781488|gb|FQ468332.1|FQ468332
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|352781638|gb|FQ468936.1|FQ468936
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|352781598|gb|FQ468896.1|FQ468896
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|352776761|gb|FQ472648.1|FQ472648
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGEST: gi|71873371|gb|DT022426.1|DT022426
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
EST: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAG TTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
genomic: GTACCTTTGCTCGGAGATTGGCCCAGGCATTTCCAACATGGCAGgtattttttc ... gttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAG
attttggttcatgacatacgaatctcacttgtttcacatgattctgttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGAGGGGCCCTCATACTGTTGCTGCAGCTGCTCTTGATGTCCTAAAGCTA
tgttgac putative branch site (score: 3)
ttctgtt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttcaactttatataaatggtgcatccatactgaacaaaagcattttggttcatgacatacgaatctcacttgtttcacatgattctgttgacatagTTTCTCTCAGTAGACCTGCGGTGCCATGGTGATTCAGCATCAATTAGTAAGAGGGGCCCTCATACTGTTGCTGCAGCTGCTCTTGATGTCCTAAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - gcatcca
- - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacatg