1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctatctattccttaagaattttataatcaatttcaaattgtgttgcataaactattgatgattcttactaacttgattaagctttatctcacatttcagTTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGCT
species | Vitis vinifera |
transcript | Vv18s0001g04420.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATCCATTCCTTGAATGTTTTGAGTTCACCCAAGAGTCCAATGTTCAAG TTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGTCATCAGTAATCATCATGEST: gi|110726674|gb|EE102660.1|EE102660
genomic: TGATCCATTCCTTGAATGTTTTGAGTTCACCCAAGAGTCCAATGTTCAAGgtttgtggtt ... cacatttcagTTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATG
EST: TGATCCATTCCTTGAATGTTTTGAGTTCACCCAAGAGTCCAATGTTCAAG TTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGEST: gi|71859197|gb|DT008252.1|DT008252
genomic: TGATCCATTCCTTGAATGTTTTGAGTTCACCCAAGAGTCCAATGTTCAAGgtttgtggtt ... cacatttcagTTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATG
EST: TGATCCATTCCTTGAATGTTTTGAGTTCACCCAAGAGTCCAATGTTCAAG TTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGTCATCAGTAATCATCATG
genomic: TGATCCATTCCTTGAATGTTTTGAGTTCACCCAAGAGTCCAATGTTCAAGgtttgtggtt ... cacatttcagTTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATG
gcataaactattgatgattcttactaacttgattaagctttatctcacatttcagTTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGCT
ctttatctc CT-rich tract
ttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatctattccttaagaattttataatcaatttcaaattgtgttgcataaactattgatgattcttactaacttgattaagctttatctcacatttcagTTAGTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - cataaac