1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaccatccttgattcaaagcacctttttattttttttatataattttgtgttggtgttagttgattcacccttcccttttgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAAAGCCGAGAAGACATGGAGAGACACCTTAGGAAGCTAAGGGACTTCAGCA
species | Vitis vinifera |
transcript | Vv18s0001g01770.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG AGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAAEST: gi|37188703|gb|CF608052.1|CF608052
genomic: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatcc ... tgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
EST: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG AGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAAEST: gi|349824926|gb|FQ406465.1|FQ406465
genomic: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatcc ... tgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
EST: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG AGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
genomic: ACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCGgtgaccatcc ... tgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAA
tttatataattttgtgttggtgttagttgattcacccttcccttttgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAAAGCCGAGAAGACATGGAGAGACACCTTAGGAAGCTAAGGGACTTCAGCA
agttgat putative branch site (score: 5)
ttcacccttccctttt CT-rich tract
ataattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaccatccttgattcaaagcacctttttattttttttatataattttgtgttggtgttagttgattcacccttcccttttgtactccagAGTGAAAAAGATGATCCCACTACAGTGATAGAGAGGGAAGAGTGGACAAAAAGCCGAGAAGACATGGAGAGACACCTTAGGAAGCTAAGGGACTTCAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA