Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcagATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAG

Basic information

species Vitis vinifera
transcript Vv17s0053g00780.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 5
gtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcagATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAG
     ||      ||  ||  ||| |  |||    |      | ||||    ||    || || |||   |        |  | | | | ||||||||||  ||| |||| ||||||||  | |||||  ||||| | ||||||||||||||  | || |||||||||||||||||||||| |||||||||||
----gtatgttggaattttgtcctatttattatctttgaatattcattctcgttttgcttcaactttgaatttttattttgttatgatt-cagATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAATTCTATTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAG

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 5
gtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcagATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAG
     ||      ||  ||  ||  |  ||||   |     || ||||    ||    ||  | ||||  |        |  | | | | |||||||||| |||| |||| || |||||  | |||||  ||||| | || ||||| || ||  | || ||||| |||||||||||||||| |||||||||||
----gtatgctggaattttgtccaatttattttctttgaattttcattcccgttttgcttccatttttattttttatttttttatgatt-cagATGTATGAAGAGTTGCAAGTACTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTTCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcagATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAG
 ttcttac  putative branch site (score: 2)
                  atttgaaatttttct  TA-rich tract