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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattacattataattagcagctattttgttgtcttttcatgattgaacatggtcctattttttccagAATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTGGATTGCCTTGGAAACCTTGGAATTGCTTACCTTAGAAG

Basic information

species Vitis vinifera
transcript Vv17s0000g09890.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09890.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G18330.1 (Glycine max), 3'ss of exon 5
-------------------------------------------------------gtaaaattacattataattagcagctattttgttgtcttttcatgattgaacatgg-tcctattttt--tccagAATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTGGATTGCCTTGGAAACCTTGGAATTGCTTACCTTAGAAG
                                                        |  |    || |||     |   |||  || ||  |||| | |||   ||  ||  | | | |  |  |  ||| |||| | || ||||||||||| |||||| ||||||||||||| ||||  |||||||| ||||| ||||| || ||||| |||| || 
gtacaattatcttgtttgctctttttcttatgctttaatgttcttaaggcatatgcttcagcgtcagtatttgatgtgactacctttttccctttgcttgaaccaatgtgacttccaatgctggtgtagAGTGCTGTCTCAGTTTTGTCATCATTGTTGTCCATTGCTCCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTAAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859945|gb|DT009000.1|DT009000
EST:     CTGTGTGGAATACTCTCGGCTTAATACTTCTTAGAACTGGCCGTCTGCAG                         AATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTG
genomic: CTGTGTGGAATACTCTCGGCTTAATACTTCTTAGAACTGGCCGTCTGCAGgtaaaattac ... ttttttccagAATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagcagctattttgttgtcttttcatgattgaacatggtcctattttttccagAATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTGGATTGCCTTGGAAACCTTGGAATTGCTTACCTTAGAAG
                                        tcctattttttcc  CT-rich tract
                                           tatttttt  TA-rich tract