Sequence
atgc intronic sequence ATGC exonic sequence...gttctgactactttaggcaatagttttcatgtctgcaaaagaatgaaccttttcaccctccttggtctatgaagtaataacaatgtttggatgtttgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07780.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G121851_T02 (Zea mays), 3'ss of exon 5
--gttctgactactttaggcaatagttttcatgt-ctgcaaaagaatgaacct-----tttcaccctccttggtctatgaagtaataacaatgtttggatgtt-------tgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTG
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gtattgttcttgtcttctattgtttttctgatgttctgtatattgttgtctatggtagttgcagttcagcaaagatgtgtattactaaccctgcttt-atgtccaaatcgtgcagATATTAGGTGGTGGCATGTCAACAAAGATGTGGGAGGCCACTGTGGAACATGCAAAAACATGTGTTCTAACTGACAAAGTGCATCACTACTATCCTGATG
upper sequence: Vv17s0000g07780.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G01860.1 (Glycine max), 3'ss of exon 4
----gttctgactactttaggcaatagttttcatgtctgcaaaagaatgaaccttttcaccctccttggtctatgaagtaataacaatgtttggatgtttgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTG
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caaagttctgaatgataaacattctaata---atgtctagaaatagctaagtactacctttctcttgggcaaatgaataaatt-cattgcttggaaatgtgcagATACTGGGCACTGGTATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACGTGTACTTCCCTTCTA
upper sequence: Vv17s0000g07780.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G10040.1 (Glycine max), 3'ss of exon 4
----gttctgactactttaggcaatagttttcatgtctgcaaaagaatgaaccttttcaccctccttggtctatgaagtaataacaatgtttggatgtttgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTG
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caaagttctgaatgataaacattctaata---atgtctagaaatagctaagcactacctttctcttgggcaaatgaataaatt-cattgcttggaaatgtgcagATACTGGGCACTGGGATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACGTGTACTTCCCTTCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71867839|gb|DT016894.1|DT016894EST: TAAAGGATTTTCTGACTCTACTCTATTTAGACTCACCAAGGCTCCGAAAT ATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACAT
genomic: TAAAGGATTTTCTGACTCTACTCTATTTAGACTCACCAAGGCTCCGAAATgtaacattca ... atgtttgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaccttttcaccctccttggtctatgaagtaataacaatgtttggatgtttgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTG
taataac putative branch site (score: 1)
taataacaatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctgactactttaggcaatagttttcatgtctgcaaaagaatgaaccttttcaccctccttggtctatgaagtaataacaatgtttggatgtttgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-ttctgac
- - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg