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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaccagtcttagaatcaacaaaggattattttcctgttcactcgttcttttgtgtaatatgacccttgacatcattattaattccagATGTTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAA

Basic information

species Vitis vinifera
transcript Vv17s0000g07440.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G00370.2 (Glycine max), 3'ss of exon 5
gtaagaaccagtcttagaatcaacaaaggattattttcctgttcactcgttcttttgtgtaatatgacccttgacatcattattaattccagATGTTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAA
         ||| ||      || | | | | ||| |   |||   |   |||||| |      |||   |  |        |||||  |||||||||||||||||||| | | ||| ||| | ||||||||||| || ||||||||| ||||||| | | |||| |||||||| || |||||||| ||  |
------gtgagtgttgtttagaagatatgctaattgtttggtttgtttaatcttttat------tgattgtatatgct----ttaatctcagATGTTATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGA

upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G08020.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaccagtcttagaatcaacaaaggattattttcctgttcactcgttcttttgtgtaatatgacccttgacatca----ttattaattccagATGTTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAA
|||||| |   | |    ||  |  |    || | ||  |   || | ||| | |  || ||  |      |||| | |    || | | ||||||||||||| || |||||||||||||| |||||||| ||||||||  |||||||||   ||||||| ||  | || ||| | ||||||||| | || ||  |
gtaagagctgttatctatattga--actctttttgtttgtaaacattggtt-tatgatgaaacttagttagtgactttaatgtttctcatttccagATGTTATCGGTGTTGTTCAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAGAGATATAACTTTGGCTGATGA

upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G61000.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaccagtcttagaatcaacaaaggattattttcctgttcactcgttcttttgt-gtaatatgacccttgacatcattattaattccagATGTTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAA
|||||| ||    |||   |||   ||   |  |||||| | | | |  | | || || || |||  | | |     | ||  |  ||| ||||| |||||||||||||||||||||| |||||||| ||||| ||  ||||||  | | ||||||| ||  |||||||| | ||||||||| | || ||  |
gtaagagcc----ttattgtcattgaacattctttttccaggtaaattatacattggttgtgataataacttaattgttatgct--atttcagATCTTATTGGAGTTGTTCAAAGTGTATCTCCTACCATGAGTATTAGAAGGAGAACTGACAATGAGATGATTCCTAAGAGGGATATAACTTTGGCTGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgttcactcgttcttttgtgtaatatgacccttgacatcattattaattccagATGTTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAA
                                           tattaat  putative branch site (score: 2)
                                    acatcattattaatt  TA-rich tract