Sequence
atgc intronic sequence ATGC exonic sequence...aagaaaaatggttagaacttttttctcaggttatactcaacataacctattctaatttttcttagttgtgtgttaatagattgatattctttgcttgtagGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G09020.2 (Glycine max), 3'ss of exon 2
aagaaaaatggttagaacttttttctcaggttatactcaacataacctattctaatttt------tcttagttgtgtgttaatagattgatattctttgcttgtagGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCC
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-----aagacattgtaatttcataaacaatcagctccccagatattgtccttaggttttgtaatatattaatttgatggtataacact-ataacatatttttgtagGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAGCGTTC
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G31180.1 (Glycine max), 3'ss of exon 9
aagaaaaatggttagaacttttttctcaggttatactcaacataacctattctaatttttc--ttagttgtgtgttaatag-attgatat----tctttgcttgtagGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCC
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-------taaattataatatcatgaacatccagtgctcaatacattgttcttcaattttgtaatctgttaattatttatactatttatgtaacatttgtttttgtagGAAAATTTAACCTGGGGAAACTGTACGAGAAGATCGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCC
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G07540.1 (Glycine max), 3'ss of exon 10
aagaaaaatggttagaacttttttctcaggttatactcaacataacct---attctaatttttcttagttgtgtgttaatagattgatat-tctttgcttgtagGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCC
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----aatttcataaacaatcagctccccagatattgtccttgcctccttgggttttgtaatcttttagtttgatggtatagcactataacatatatttttgtagGAAAATTTAACCTTGGGAAACTTTCTGAGAAGATTGGCTTCAACAAAGAAATCATATCAAAGGGTAGATATGCTGAGCTCCATGCAGCTGAACAGCGTTC
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G73990.1 (Arabidopsis thaliana), 3'ss of exon 9
-----------------aagaaaaatggttagaacttttttctcaggttatactcaacataacctattcta---atttttcttagttgtgtgttaatagattgatattctttgcttgtagGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCC
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gtgatctttctttttctacttaccaaagagaaagttttgtgctctgaatctttgtacaactatctctttcacccagtcgccatgcttgattgcttct-gtttgttcttcttg--ttgcagCAAGATTTACCTTGGCCAAACTATATGAAAAGATTGGCTTCAACAAGGAAACTATATCTAGAGGAAAATATGCTGAGCTTCTGGGGGCTGAGGAAAGACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctattctaatttttcttagttgtgtgttaatagattgatattctttgcttgtagGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCC
ttctttgctt CT-rich tract
ttaatagattgatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagaaaaatggttagaacttttttctcaggttatactcaacataacctattctaatttttcttagttgtgtgttaatagattgatattctttgcttgtagGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
aagaaaa
- - - - tggttag
- - - - - - - - - - - - - - - - - - - - cataacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt