Sequence
atgc intronic sequence ATGC exonic sequence...tttgtgttttgctgaataatcttttaaagtagaagaaatgcagacgatgctggggtgagggtgaaacgaaatctcttctcaatactgtacttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G147430_T02 (Zea mays), 3'ss of exon 6
tttgtgttttgctgaataatcttttaaagtagaagaaatgcagacgat-gctgg-ggtgagggtgaa-acgaaatctctt-ctcaatactgtacttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTG
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ctgctacttgtttctattgtccgtgactacatgcaataaacaaacccttgctggcagccctggtgttcactaactctcttattccattctgt----gttcaaagGAATGGGTGACCGACAATTCTTTTATCATATCACCAAGGATCACTTTTGAAGTCAGTGTTCGTCTTCTTGGTGGTTTGATGGCATTGGGATATACTATAG
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G07610.1 (Glycine max), 3'ss of exon 7
---tttgtgttttgctgaataatcttttaaagtagaagaaatgcagacgatgctggggtgagggtgaaacgaaatctct-tctcaatactgtactt--gttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTG
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ctactcctgccttcttgagt-----ttgaaatttgcggaaaagtttgcagt-tagaagcaaaattactgaaaaacctctataatgttagtgcatttttgttttcagGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAAGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTG
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G09080.1 (Glycine max), 3'ss of exon 6
tttgtgttttgctgaataatcttttaaagtagaagaaatgcagacgatgctggggtgagggtgaaacgaaatctct-tctcaatactgtac--ttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTG
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-ctataactaccttcttgag-tttgaaatttgctgagaagtttgcagt-tagaagcaaaattactgcaaaaactctatagtgatagtgcattattgttttcagGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTG
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G73980.1 (Arabidopsis thaliana), 3'ss of exon 6
----------tttgtgttttgctgaataatcttttaaagtagaagaaatgcagacgatgctggggtgagggtgaaacga---aatctcttctcaatactgtacttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTG
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gtttggccaatacctgtccagactagtttttcttctgtaaacaccatatcatatcaaagctgaacgaatggtttattaatttgatgaatgattaccgttctatgtgttcttagGAGTGGGTTACAGATCGTCCATTTATTATATCACCCAGAATAACTTTTGAAGTTAGTGTTCGTCTTCTTGGAGGATTAATGGCACTGGGTTATACCATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|329112337|gb|JG391805.1|JG391805EST: GCAAATACAATCTCATGTTTGAG GAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAA
genomic: GCAAATACAATCTCATGTTTGAGgtttgactgt ... ttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgctggggtgagggtgaaacgaaatctcttctcaatactgtacttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTG
cttgttttc CT-rich tract
ttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgtgttttgctgaataatcttttaaagtagaagaaatgcagacgatgctggggtgagggtgaaacgaaatctcttctcaatactgtacttgttttcagGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - -tgctgaa
- - - - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - tgcagac
- - - - - - - - - - - - - - - - - - - - - - -gatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacgaa