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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattttttcatatactttcatttgagacttttgtatttcttgtgtgaatttgattttaaattctatctcttcatgctacctgcatggttctatcctttaatatccatgttttactttcacagCCATTATGAGGATTATCTTTCTGCATCATTTCCATTTGGATCATACAAGCAAGTCTTTATTGCTCCTGAAATGGCAATATCCTCATTGACATTGGGAGCC

Basic information

species Vitis vinifera
transcript Vv17s0000g04200.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os09g24440.1 (Oryza sativa), 3'ss of exon 5
gtttgtattttttcatatactttcatttgagacttttgtatttcttgtgtgaatttga-ttttaaattctatctcttcatgctacctgcatggttctatcctttaatatcc--atgttttactttcacagCCATTATGAGGATTATCTTTCTGCATCATTTCCATTTGGATCATACAAGCAAGTCTTTATTGCTCCTGAAATGGCAATATCCTCATTGACATTGGGAGCC
                                              |||  ||  | | || |  |    |       |  |||  ||  | | |  |     || ||||   | |   |  | |  ||||  |||||| ||||||||| ||||||||||||| ||||||  |||||| || || ||| || | |||||||||  | ||||  ||   |  || ||||| 
----------------------------------------------gtgataacctaaattgtccaaaaaaaaaaagaaaactaa-tgtctagattcaagtactagtatctgaaagaccttttgttgcagCTGTTATGAAGATTATCTTGCTGCATCATTTCCTTTTGGACTATACAAACAGGTTTTTCTTCCACCTGAAATGATAGTATCACCAACAAGCTTAGGAGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcatgctacctgcatggttctatcctttaatatccatgttttactttcacagCCATTATGAGGATTATCTTTCTGCATCATTTCCATTTGGATCATACAAGCAAGTCTTTATTGCTCCTGAAATGGCAATATCCTCATTGACATTGGGAGCC
                           ctttaat  putative branch site (score: 4)
                                         ttttactttc  putative PPT
                            tttaatat  TA-rich tract