1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtctgaagatattgcttaggtttataagtatataaacatttaaaaaaaaaaatagaagggaaccttgtaatattgattacttatgcttgtctctgcagGATGAGAAGTGTGATTGATCACTTTAAGGGGAGTCGTGATTTTCCTCGTTTAAGAATTG
species | Vitis vinifera |
transcript | Vv17s0000g03980.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGCAAAACTACGGCTATTGCCAAAAGGTGGACATGGAGGACACAATGG GATGAGAAGTGTGATTGATCACTTTAAGGGGAGTCGTGATTTTCCTCGTTT
genomic: TTTTCAAAACTACGGCTATTGCCAAAAGGTGGACATGGAGGACACAATGGgtatgtacca ... gtctctgcagGATGAGAAGTGTGATTGATCACTTTAAGGGGAGTCGTGATTTTCCTCGTTT
aaaaaaaaatagaagggaaccttgtaatattgattacttatgcttgtctctgcagGATGAGAAGTGTGATTGATCACTTTAAGGGGAGTCGTGATTTTCCTCGTTTAAGAATTG
tattgat putative branch site (score: 3)
cttgtctct putative PPT
taatattgattactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtctgaagatattgcttaggtttataagtatataaacatttaaaaaaaaaaatagaagggaaccttgtaatattgattacttatgcttgtctctgcagGATGAGAAGTGTGATTGATCACTTTAAGGGGAGTCGTGATTTTCCTCGTTTAAGAATTG
-tgtctga
- - - - - - - tgcttag
- - - - - - - - - - - - - - - - -ataaaca
- - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc