1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaagaattttgttccaaccatgcttctcactagctgcttcatgttattaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAAGATCTTGATGAGGTGATCCTTGTTGGTGGATCAACACGTATCCCTGCT
species | Vitis vinifera |
transcript | Vv17s0000g03310.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|110689187|gb|EE065194.1|EE065194
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|110360709|gb|EC924030.1|EC924030
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|26263790|gb|CA814853.1|CA814853
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|110376029|gb|EC941068.1|EC941068
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|56408917|gb|CX017169.1|CX017169
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|110376831|gb|EC941910.1|EC941910
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|110374207|gb|EC938830.1|EC938830
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|110684783|gb|EE062458.1|EE062458
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAEST: gi|351024502|gb|FQ426311.1|FQ426311
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
EST: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAG GCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
genomic: ACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaatt ... attttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAA
gtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAAGATCTTGATGAGGTGATCCTTGTTGGTGGATCAACACGTATCCCTGCT
ttattttttc CT-rich tract
ttttaaagttttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaattttgttccaaccatgcttctcactagctgcttcatgttattaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcagGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAAGATCTTGATGAGGTGATCCTTGTTGGTGGATCAACACGTATCCCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA