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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactgcaataacctcgaaaaaatttgtggttttttgtggggatttatctgtggtgtattggttgatgaatgagtctaatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAGAGTGAAGAATTGGATGACATTTAATGAGCCAAGAGTGGTGGCTGCTCTT

Basic information

species Vitis vinifera
transcript Vv17s0000g02680.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os01g32364.1 (Oryza sativa), 3'ss of exon 5
-----gtaagtac--tgcaataacc--tcgaaaaaatttgtggttttttgtggggatttatctgtg-gtgtattggttgatgaatgagtctaatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAGAGTGAAGAATTGGATGACATTTAATGAGCCAAGAGTGGTGGCTGCTCTT
       ||  ||  ||||  | |   | |   |    ||    | |   |   |||    |  |   |||||    || |   |   |  |||    |||| |||  || || || || ||||| |||||||||||||  ||||| |||||||||||||| |||||||||||||| || || ||||| || || ||||| 
ttttaacaatcaccatgcagcagcagattgtgcattcctgaaactgtagatcaagatgatccaatatatgtatctactggtttgttt-ttgaatcacgcagGGAAGCATTCGCAGACTACGCTGAGTTTTGCTTCAAGACATTTGGCGACAGAGTGAAGAACTGGATGACATTTAACGAACCGAGAGTTGTTGCCGCTCTA

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 5
--------gtaagtact-gcaataacctcgaaaaaatttgtggttttttgtggggatttatctgtggtgtattggttg-atgaatgagtctaatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAGAGTGAAGAATTGGATGACATTTAATGAGCCAAGAGTGGTGGCTGCTCTT
         | | || | | | |    | || ||||  | |   ||    ||   ||    |     ||| |   |   |||||||  |  |||  ||||||||||||||||| |||||||| || ||||| |||||||  |||||||| ||||| |||||||||||||| ||||| || ||  | |||||||||||||||
tttctcagattaatatttgaagtttgtttgataaaaagtatatcttaacatgcttataatgcaactatgtgtaactaacatgaatgc-ttgaattgtacagGAAAGATTTTGCAGATTATGCAGAATTTTGTTTCAAGACTTTTGGAGATAGAGTTAAGAATTGGATGACGTTTAACGAACCTCGTGTGGTGGCTGCTCTT

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G11310.1 (Glycine max), 3'ss of exon 5
----------------------------------------------------gtaagtactgcaataacctcgaa---aaaatttgtggttttttgtggggatttatctgtggtgtattggttgatgaatgag-----tctaatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAGAGTGAAGAATTGGATGACATTTAATGAGCCAAGAGTGGTGGCTGCTCTT
                                                      | ||  |   |||   |   |    || ||||  || | |  | |     |  |  ||   |  ||  | |  |||| |     |  |||  |||||||| |||||||| |||||||| || ||||| |||||||  |||||||| ||||| |||||||||||||| |||||||| ||  | |||||||||||||||
gtaagtaccaatatatatacaagagcaaaaatggattattgatcttttgaatacatgttttctcatagattaatatttgaagtttgaagtatatgttagcatgcttacaatgcaattctgcataactaatgtgaatgcttaaattgtacagGAATGATTTTGCAGATTATGCAGAATTTTGTTTCAAGACTTTTGGAGATAGAGTTAAGAATTGGATGACGTTTAATGAACCTCGTGTGGTGGCTGCTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351038587|gb|FQ464453.1|FQ464453
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351042229|gb|FQ442696.1|FQ442696
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351055479|gb|FQ442275.1|FQ442275
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351015813|gb|FQ431768.1|FQ431768
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349820199|gb|FQ406875.1|FQ406875
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACCTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349828779|gb|FQ419112.1|FQ419112
EST:     CCTTTGGCACTTGAGTAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351033074|gb|FQ446427.1|FQ446427
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|352794098|gb|FQ479340.1|FQ479340
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351026942|gb|FQ436595.1|FQ436595
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351045661|gb|FQ440846.1|FQ440846
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGTCAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351041781|gb|FQ455991.1|FQ455991
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCCGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351022837|gb|FQ428746.1|FQ428746
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|352790099|gb|FQ479709.1|FQ479709
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349833003|gb|FQ416381.1|FQ416381
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349824288|gb|FQ417699.1|FQ417699
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTACGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|110691322|gb|EE069288.1|EE069288
EST:     CCTTTGGCACTTGAGAAGAA-TACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351023766|gb|FQ448317.1|FQ448317
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTACGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351042412|gb|FQ442879.1|FQ442879
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349828121|gb|FQ415449.1|FQ415449
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349821869|gb|FQ413040.1|FQ413040
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACCTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|110690437|gb|EE067536.1|EE067536
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349807852|gb|FQ402243.1|FQ402243
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACCTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351038429|gb|FQ464295.1|FQ464295
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349830823|gb|FQ417121.1|FQ417121
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349824165|gb|FQ417552.1|FQ417552
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351042983|gb|FQ434424.1|FQ434424
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351049247|gb|FQ428990.1|FQ428990
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351042839|gb|FQ451133.1|FQ451133
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351021685|gb|FQ437070.1|FQ437070
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351019070|gb|FQ426569.1|FQ426569
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|110686135|gb|EE063475.1|EE063475
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351038347|gb|FQ461039.1|FQ461039
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351042390|gb|FQ442857.1|FQ442857
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351016597|gb|FQ424024.1|FQ424024
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351019040|gb|FQ426539.1|FQ426539
EST:     CCTCTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349820204|gb|FQ406880.1|FQ406880
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACCTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351016480|gb|FQ423907.1|FQ423907
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351024209|gb|FQ423632.1|FQ423632
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349818794|gb|FQ409328.1|FQ409328
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGTGGATTATGCTGACCTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351032953|gb|FQ461842.1|FQ461842
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGTCAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|110687898|gb|EE065834.1|EE065834
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|110688342|gb|EE066782.1|EE066782
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349811511|gb|FQ409507.1|FQ409507
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACCTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349829906|gb|FQ422219.1|FQ422219
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351012024|gb|FQ429830.1|FQ429830
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349828601|gb|FQ418336.1|FQ418336
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAGGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351054304|gb|FQ450387.1|FQ450387
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGTCAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351031036|gb|FQ444863.1|FQ444863
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|110690651|gb|EE067999.1|EE067999
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|351055113|gb|FQ440452.1|FQ440452
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTATAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|110694692|gb|EE072021.1|EE072021
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|352798358|gb|FQ480383.1|FQ480383
EST:     CCTTTGGTACTTGAGAAGAAATACAATAGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|352794496|gb|FQ481729.1|FQ481729
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
EST: gi|349828289|gb|FQ416242.1|FQ416242
EST:     CCTTTGGCACTTGAGAAGAAATACAATGGGTTGTTGAGTTACAGAGTAGT                         GAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG
genomic: CCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGTgtaagtactg ... aatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtggggatttatctgtggtgtattggttgatgaatgagtctaatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAGAGTGAAGAATTGGATGACATTTAATGAGCCAAGAGTGGTGGCTGCTCTT
                                         gtctaat  putative branch site (score: 3)
                                          tctaatatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtactgcaataacctcgaaaaaatttgtggttttttgtggggatttatctgtggtgtattggttgatgaatgagtctaatattacagGAAAGATTTTGCGGATTATGCTGACTTTTGCTTCAAGATGTTTGGAGACAGAGTGAAGAATTGGATGACATTTAATGAGCCAAGAGTGGTGGCTGCTCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT