Sequence
atgc intronic sequence ATGC exonic sequence...aacattcttttgtttttctagtgcaaatcaaatttaagaaatattaggagagttacatctattgtggaaacaagcctgagttatttgttctattttgcagGCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os01g67570.1 (Oryza sativa), 3'ss of exon 5
aacattcttttgtttttc-tagtgcaaatcaaatttaagaaatattaggagagtt-acatctattgtggaaacaagcctgagttat-ttgttctattttgcagGCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGAT
|| ||| |||||| ||| || | ||| | | || | || | || || | || | | | ||| ||||||| || |||||||| |||||||| || || || | |||||||||||||| ||||||| |||||||| || ||
---atgaatttatttttcatagaaaaagttttattcctttgttgcctgagttgtggaaatttctttaattaattaatggagcttgtataactgtatgatgcagGCCAAACGAGATCCCTACCGCTTCCGTTTCCCACTCGAAATGCGCTTTGTATATCCTAACATTGATCATCTAAT
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G18080.1 (Glycine max), 3'ss of exon 5
-------aacattcttttgtttttctagtgcaaatcaaatttaagaaatattaggagagttacatctattgtggaaacaagcctgagttatttgttctattttgcagGCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGAT
| || | | |||| | | | || || ||| ||| ||| || | | || | || || | |||| | || | ||||||||||||||||||||||||| ||||| || |||||||| ||| | || ||||||||||| ||||| || || || ||
gattttaatcactatagtgttagtttccatgatttctgtctttagacataaatgga---tttcctttaccatctgttca---cttatttatat-ttttgttttgcagGCAAAGCGAGATCCTTATCGCTTCCGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAAT
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G36900.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------------------aacattcttttgtttttctagtgcaaatcaaatttaag---aaatattaggagagttacatctattgtggaaacaagc-ctgagttatttgt--tctattttgcagGCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGAT
| || | | | |||| || | | | | | | || | || || | | ||| | || | | |||||| | | | ||||||||||||||||||||||||| ||||| || |||||||| ||| | || |||| ||||| ||||| ||||| || ||
gtaagtaagatagacaaggctatatgactgattctgtatccataaattccttcctgaccaaatttgaatatcaaatggattttaatcactagtgttagtttccatgatttctgtgtttagacataaatggatttcc-ttaattcctttaccatctgttcacttatttatattttgttttgcagGCAAAGCGAGATCCTTATCGCTTCCGCTTTCCTATCGAACTTCGTCTTGTCGATCCAAATATAGATCATCTAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggagagttacatctattgtggaaacaagcctgagttatttgttctattttgcagGCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGAT
ttctatttt CT-rich tract
ttatttgttctatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacattcttttgtttttctagtgcaaatcaaatttaagaaatattaggagagttacatctattgtggaaacaagcctgagttatttgttctattttgcagGCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGAT
- - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - -aagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcctga