Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctacctttttagacgatgaaaggttctagcttactgatgttcttatagtaatgtgcaataggcatggaagcactaatgctgtttctctctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG

Basic information

species Vitis vinifera
transcript Vv17s0000g01270.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416688|gb|EC982685.1|EC982685
EST:     ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAG                         AAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
genomic: ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAGgtgatcacct ... ctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
EST: gi|351053900|gb|FQ441666.1|FQ441666
EST:     ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAG                         AAAAAACTTGATGAGACCGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
genomic: ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAGgtgatcacct ... ctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
EST: gi|110421721|gb|EC988021.1|EC988021
EST:     ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAG                         AAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
genomic: ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAGgtgatcacct ... ctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
EST: gi|351035749|gb|FQ463594.1|FQ463594
EST:     ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAG                         AAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
genomic: ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAGgtgatcacct ... ctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
EST: gi|110424420|gb|EC990781.1|EC990781
EST:     ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAG                         AAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
genomic: ATTCCTGTGGTGAAATATATGTTGATTTGCAGAACTATACTTATTCAAAGgtgatcacct ... ctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagtaatgtgcaataggcatggaagcactaatgctgtttctctctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG
                           cactaat  putative branch site (score: 2)
 ctgtttctctctgtt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgctacctttttagacgatgaaaggttctagcttactgatgttcttatagtaatgtgcaataggcatggaagcactaatgctgtttctctctgttggcagAAAAAACTTGATGAGACTGATGAATGCCAGTTACAGTATCCAAGTTTTGAG

tgctacc
- - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - -aatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactaa