1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtttctgtttcttttcttcattttttgccattatctggaattgtatttcctaaatactgactgttactattgatttttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTCAGAGCTCGTGATCGGGGTGGACGGGCAGTTCCAGCTCCAGAAGCCAAT
species | Vitis vinifera |
transcript | Vv17s0000g00620.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351046377|gb|FQ452993.1|FQ452993
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: ACTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351055934|gb|FQ453395.1|FQ453395
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|352786901|gb|FQ481276.1|FQ481276
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351043417|gb|FQ451469.1|FQ451469
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351043887|gb|FQ452681.1|FQ452681
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351038967|gb|FQ457642.1|FQ457642
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: ACTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGGAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351055161|gb|FQ440500.1|FQ440500
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: ACTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|110382073|gb|EC938409.1|EC938409
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: AAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351032086|gb|FQ460343.1|FQ460343
genomic: AAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351043841|gb|FQ452635.1|FQ452635
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|349824254|gb|FQ417641.1|FQ417641
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351013309|gb|FQ425014.1|FQ425014
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|352795551|gb|FQ480139.1|FQ480139
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: ACTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|351034440|gb|FQ463253.1|FQ463253
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|352790536|gb|FQ478176.1|FQ478176
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|352791008|gb|FQ480001.1|FQ480001
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: CCTCTCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTEST: gi|33408038|gb|CF213665.1|CF213665
genomic: CCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
EST: AAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAG GCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
genomic: AAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGgttggtttct ... ttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGT
tatctggaattgtatttcctaaatactgactgttactattgatttttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTCAGAGCTCGTGATCGGGGTGGACGGGCAGTTCCAGCTCCAGAAGCCAAT
ttgatttttctcttt CT-rich tract
ttactattgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtttctgtttcttttcttcattttttgccattatctggaattgtatttcctaaatactgactgttactattgatttttctctttagGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTCAGAGCTCGTGATCGGGGTGGACGGGCAGTTCCAGCTCCAGAAGCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC