1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaggttgccaggaaaaattgggataccaggcatatcccttgttgtcctgggttgcaaacaagcgtacagaattactcatgtagagtttcactttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG
species | Vitis vinifera |
transcript | Vv17s0000g00160.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATATGATTTGCGTGCACACACG GATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAEST: gi|29783904|gb|CB343962.2|CB343962
genomic: GCATATGATTTGCGTGCACACACGgtgagtgatg ... ctttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGA
EST: AGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACG GATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAEST: gi|46917791|gb|CN547120.1|CN547120
genomic: AGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACGgtgagtgatg ... ctttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGA
EST: ATGATTTGCGTGCACACACG GATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAEST: gi|29783991|gb|CB344183.2|CB344183
genomic: ATGATTTGCGTGCACACACGgtgagtgatg ... ctttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGA
EST: AGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACG GATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAEST: gi|28965206|gb|CB344239.1|CB344239
genomic: AGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACGgtgagtgatg ... ctttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGA
EST: AGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACG GATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGA
genomic: AGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACGgtgagtgatg ... ctttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGA
cctgggttgcaaacaagcgtacagaattactcatgtagagtttcactttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG
tttcacttt CT-rich tract
agaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggttgccaggaaaaattgggataccaggcatatcccttgttgtcctgggttgcaaacaagcgtacagaattactcatgtagagtttcactttgtgtagGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- ggttgcc
- - - - - ggaaaaa
- - - - - - - - - - - - -ccaggca
- - - - - - - - - - - - - - - - - tcccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgta