Sequence
atgc intronic sequence ATGC exonic sequence...tagtgattttctgcttgcttcagagttatttcaaacttgcctattaaaaaaaccaagtgttgttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G26560.1 (Glycine max), 3'ss of exon 4
tagtgattttctgcttgcttcagagttatttcaaacttgcctattaaaaaaacc---aagtgttg----ttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
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------ttttattgata-ttaagaatgttttgaggcatgactattctacaaagctgtaatttttgtatgttatcttcttgctatttatttactttattccagtgcagTGCGCTGTCCAAGTTTATAAACAAAACAGCTGATGCTGGTATCACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTT
upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G38270.1 (Glycine max), 3'ss of exon 4
--tagtgattttctgcttgcttcagagttatttcaaacttgcctattaaaaaaaccaagtgttgttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
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atgaataagtaagt-cttgaacaaaaattttatttgcaaaatctatgcctcattttaggtat-gttatattcttgcaatttatttactttattccagtgcagTGCCCTGTCCAAGTTTATAAATAAAACCGCTGATGGAGGTATCACTGCCCTTCATATGGCTGCACTAAATGGGTACTTTGATTGTGTACAACTGCTGCTT
upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G29590.1 (Glycine max), 3'ss of exon 4
tagtgattttctgcttgcttcagagttatttcaaacttgcct--attaaaaaaacca---agtgttgttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
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---gagttttttgctattactagtgtt--ttaaggcctgactttactagagctgtcatttaggtctgttatattcttgcaatttatttactttattccagtgcagTGCCCTTTCCAAGTTTGTAAATAAGACTGCTGATGGAGGAATCACTGCCCTTCATATGGCTGCGTTAAATGGGTACTTTGATTGTGTACAACTGCTGCTT
upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G32090.1 (Glycine max), 3'ss of exon 4
tagtgattttctgcttgcttcagagttatttcaaacttgcctattaaaaaaacc---aagtgttg----ttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
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------ttttattgata-ttaagaatgttttgaggcatgactattctacaaagctgtaatttttgtatgttatcttcttgctatttatttactttattccagtgcagTGTGCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGCACTTTGATTGTGTACAACTGCTACTT
upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G07270.1 (Arabidopsis thaliana), 3'ss of exon 4
tagtgattttctgcttgcttcagagttatttcaaacttgccta--ttaaaaaaaccaagtgttgttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
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-----gtttttttttttttggaaaccatcttcatgtttgtaaggttttgattgactatgtagttccaacaa---aaaaagaaattgtctt---ttggtgcagCGCATTGTCTAAATTTGTGAATAAGGCGGCTGATGGTGGAATAACAGCTCTTCACATGGCTGCCTTGAATGGATTATTTGATTGTGTGCAGCTTTTGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaaaaccaagtgttgttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
tttatctt CT-rich tract
aattaatttatcttac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagtgattttctgcttgcttcagagttatttcaaacttgcctattaaaaaaaccaagtgttgttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - gcttgct
- - - - - - - - - - - - - - - - - -cttgcct
- - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgtc