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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattattctgggtctttgatctcagaagctacaattttcatatctgttgtttggcctcctttgcatgttttatataactcactttgcctatacctttttactgatgatgcagTCGTTCACCCCCGGCACGTGAAAGATCTCGATCTTAGTAGCTCAAAAGGAACAACTGGTCTCTTGCTGGCAGCAGAACTTCCTTGAAAGTGTTGCAATTT

Basic information

species Vitis vinifera
transcript Vv16s0100g00450.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715805|gb|EE094278.1|EE094278
EST:     AGTCCCAATTATGGTGGATCTGCAAGCCCCATGAATGGGAGATACCGGAG                         TCGTTCACCCCCGGCACGTGAAAGATCTCGATCTTAGTAGCTCAAAAGGAA
genomic: AGTCCCAATTATGGTGGATCTGCAAGCCCCATGAATGGGAGATACCGGAGgtttgtatta ... gatgatgcagTCGTTCACCCCCGGCACGTGAAAGATCTCGATCTTAGTAGCTCAAAAGGAA
EST: gi|34548626|gb|CF516858.1|CF516858
EST:     AGTCCCAATTATGGTGGATCTGCAAGCCCCATGAATGGGAGATACCGGAG                         TCGTTCACCCCCGGCACGTGAAAGATCTCGATCTTAGTAGCTCAAAAGGAA
genomic: AGTCCCAATTATGGTGGATCTGCAAGCCCCATGAATGGGAGATACCGGAGgtttgtatta ... gatgatgcagTCGTTCACCCCCGGCACGTGAAAGATCTCGATCTTAGTAGCTCAAAAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttgcatgttttatataactcactttgcctatacctttttactgatgatgcagTCGTTCACCCCCGGCACGTGAAAGATCTCGATCTTAGTAGCTCAAAAGGAACAACTGGTCTCTTGCTGGCAGCAGAACTTCCTTGAAAGTGTTGCAATTT
                                         tactgat  putative branch site (score: 2)
       atgttttatataact  TA-rich tract