1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcatgcccaacaaagatttgattgtaattttgatttacagaaattcttgatgctaatcattcttttgtttcttttgctcttgtgtagATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCTTTGCTTTTGGGGCTACCACAAATGCCTATTCAAATCTTGGAGTATTAG
species | Vitis vinifera |
transcript | Vv16s0050g02480.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGG ATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCEST: gi|110726701|gb|EE102715.1|EE102715
genomic: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGGgtaagcatgc ... tcttgtgtagATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTC
EST: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGG ATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCEST: gi|71860768|gb|DT009823.1|DT009823
genomic: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGGgtaagcatgc ... tcttgtgtagATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTC
EST: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGG ATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCEST: gi|30300354|gb|CB977148.1|CB977148
genomic: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGGgtaagcatgc ... tcttgtgtagATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTC
EST: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGG ATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTC
genomic: CACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGGgtaagcatgc ... tcttgtgtagATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTC
atttacagaaattcttgatgctaatcattcttttgtttcttttgctcttgtgtagATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCTTTGCTTTTGGGGCTACCACAAATGCCTATTCAAATCTTGGAGTATTAG
tgctaat putative branch site (score: 2)
tcattcttttgtttct CT-rich tract
aaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatgcccaacaaagatttgattgtaattttgatttacagaaattcttgatgctaatcattcttttgtttcttttgctcttgtgtagATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCTTTGCTTTTGGGGCTACCACAAATGCCTATTCAAATCTTGGAGTATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG