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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttcatctcaactcgatacttctcatttttattctgtttcatagtgactttgtgttttgttatttagatcttcttcgtagacattgatttgatgattatgctaattcttctttttggttgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG

Basic information

species Vitis vinifera
transcript Vv16s0050g01510.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01510.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G23980.1 (Glycine max), 3'ss of exon 5
gtatggttcatctcaactcgatacttctcatttttattctgtttcatagtgactttgtgttttgttatttagatcttcttcgtagacattgatttgatgattatgctaattcttctttttggttgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG
                    ||   || |||| | ||  | ||   |  |  |||  | |  |  |  ||  ||     |  ||  ||||   |||||||||   |||| ||  || |||  ||  |||| |||| ||||| || ||| ||||  | || || |   |||||  |||||||||||||||||||||||||
------------------gtatgggtcacattataataatattcagtcattgcttcttatgct--tgcttttattacacttctattcatt---ttgatgatt---ctaactcccctgtttt-ttcttttgtagCTAAGTGTTAGTATTAATGTCACAGGAGAAGACACATATGTTTTTCAACCTCGCTTATTTGGAAAG

upper sequence: Vv16s0050g01510.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G29450.2 (Glycine max), 3'ss of exon 5
gtatggttcatctcaactcgatacttctcatttttattctgtttcatagtgactttgtgttttgttatttagatcttcttcgtagacattgatttgatgattatgctaattcttctttttggttgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG
|||||| |||  | |     ||| |   || |      ||| ||| || ||   |||  ||||||||      | ||| |  | |    |||||   ||| |   ||    || ||||||      | || |||| ||||| || ||| |||| ||||| || | || ||||  |||||||||||||||||||||||||
gtatgggtcacgttatactaatatt---cagtca----ctgcttctta-tg--cttgc-ttttgttacacttctgttcattttgg----tgattc--tgactcccctgtacctgctttttc----ttctgtagCTAAGTGTTAGTATTAATGTCCCTGGAGAAGATGTATATGCTTTTCAACCTCGCTTATTTGGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712988|gb|EE088514.1|EE088514
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAAC-T
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|71859342|gb|DT008397.1|DT008397
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110733197|gb|EE109180.1|EE109180
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|29782866|gb|CB348559.2|CB348559
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|29783203|gb|CB349232.2|CB349232
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110694395|gb|EE071465.1|EE071465
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110421576|gb|EC987874.1|EC987874
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110686508|gb|EE064228.1|EE064228
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|32271506|gb|CD720665.1|CD720665
EST:     CAAAAGGTGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATACCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|46917631|gb|CN546960.1|CN546960
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110729024|gb|EE105164.1|EE105164
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|28969441|gb|CB348474.1|CB348474
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110364112|gb|EC927758.1|EC927758
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGACCAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|77581747|gb|DV219826.1|DV219826
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110687406|gb|EE064790.1|EE064790
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110693950|gb|EE070628.1|EE070628
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110711614|gb|EE088295.1|EE088295
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAA-TA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|32249238|gb|CD715057.1|CD715057
EST:     CAAAAGGTGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATACCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110732977|gb|EE108734.1|EE108734
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAA-AAATA                         CTGAGTGTCAGCATTGATGTTTCTGGTGATNGT-GCATATCATTTTCAACC
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGAT-GTTGCATATCATTTTCAACC
EST: gi|110723197|gb|EE100235.1|EE100235
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|161718657|gb|FC067946.1|FC067946
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110383861|gb|EC948264.1|EC948264
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|110426741|gb|EC993160.1|EC993160
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCT
EST: gi|71873209|gb|DT022264.1|DT022264
EST:     CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATA                         CTGAGTGTCACCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCC
genomic: CAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATAgtatggttca ... tgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACC-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtagacattgatttgatgattatgctaattcttctttttggttgctttgcagCTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG
                         tgctaat  putative branch site (score: 2)
                               ttcttctttttggtt  CT-rich tract
                            taattcttcttttt  TA-rich tract