1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cattttgcatttgtagggcattagagcaacactgattttgtaaattagatgatctatagactttatctgataatcacttgattttataactctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTAAAATGGTTGGAGATGTATTCCAGAAGCTGGGTATGTTAGACAAATACG
species | Vitis vinifera |
transcript | Vv16s0050g01450.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTEST: gi|351054436|gb|FQ450519.1|FQ450519
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTANTACTTCAATCGTTEST: gi|351033744|gb|FQ462274.1|FQ462274
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGGTCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTGGGGATTCGGCCTAATACTTCAATCGTTEST: gi|349822100|gb|FQ408429.1|FQ408429
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTEST: gi|349814396|gb|FQ398836.1|FQ398836
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTEST: gi|349815708|gb|FQ400864.1|FQ400864
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTGGGGATTCGGCCTAATACTTCAATCGTTEST: gi|351055367|gb|FQ441965.1|FQ441965
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTGGGGATTCGGCCTAATACTTCAATCGTTEST: gi|22014552|gb|BQ799586.1|BQ799586
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTEST: gi|349827078|gb|FQ421351.1|FQ421351
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTEST: gi|22013491|gb|BQ798525.1|BQ798525
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTEST: gi|351052433|gb|FQ452466.1|FQ452466
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTGGGGATTCGGCCTAATACTTCAATCGTTEST: gi|352781628|gb|FQ468926.1|FQ468926
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
EST: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAG ATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
genomic: AAATGATCTCCATCTACTATAGGAGAGACATGCACGAGAAGATGTTTGAGgtaattcttt ... tctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTT
tagatgatctatagactttatctgataatcacttgattttataactctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTAAAATGGTTGGAGATGTATTCCAGAAGCTGGGTATGTTAGACAAATACG
ttataac putative branch site (score: 2)
ctctcttgt CT-rich tract
acttgattttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttgcatttgtagggcattagagcaacactgattttgtaaattagatgatctatagactttatctgataatcacttgattttataactctcttgtagATATTTGCTGACATGGAAGAGCTCGGGATTCGGCCTAATACTTCAATCGTTAAAATGGTTGGAGATGTATTCCAGAAGCTGGGTATGTTAGACAAATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - gcatttg
- - - - - - - - ggcatta
- - - - - - - - - - - - -gcaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttga