1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggacggcttataaatttcttagaaagttgcttacaattcttatctatcctattttgttcatactcttactaacatattaatatccctttgcttgatgcagTTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGA
species | Vitis vinifera |
transcript | Vv16s0050g01180.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACAACCGTTGAAGCATCTGAGCAAGGGAATCATGTCCATACATTGAGAG TTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCEST: gi|351022507|gb|FQ447029.1|FQ447029
genomic: GACAACCGTTGAAGCATCTGAGCAAGGGAATCATGTCCATACATTGAGAGgtgatgaaat ... cttgatgcagTTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACC
EST: GACAACTGTTGAAGCATCTGAGCAGGGGAATCATGTCCATACATTGGGAG TTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCEST: gi|349832942|gb|FQ423064.1|FQ423064
genomic: GACAACCGTTGAAGCATCTGAGCAAGGGAATCATGTCCATACATTGAGAGgtgatgaaat ... cttgatgcagTTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACC
EST: GACAACTGTTGAAGCATCTGAGCAGGGGAATCATGTCCATACATTGAGAG TTCTGCCTGACTTTGTTCAGGTATACA
genomic: GACAACCGTTGAAGCATCTGAGCAAGGGAATCATGTCCATACATTGAGAGgtgatgaaat ... cttgatgcagTTCTGCCTGACTTTGTTCAGGTATACA
atcctattttgttcatactcttactaacatattaatatccctttgcttgatgcagTTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGA
tccctttgctt CT-rich tract
ttactaacatattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacggcttataaatttcttagaaagttgcttacaattcttatctatcctattttgttcatactcttactaacatattaatatccctttgcttgatgcagTTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccttt