Sequence
atgc intronic sequence ATGC exonic sequence...ttggtgtgctcttttggaataagatgcattctttgtgaagagtccaattagttgcttgccaagatctgttatgacattcatgcttttattctcagtgcagTTTGAGACATTTACTAATCATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G24430.1 (Glycine max), 3'ss of exon 2
-------ttggtgtgctcttt-tggaataagatgcattctttgtgaagagtccaattagttgcttgccaagatctgttatgacattcatgcttttattctcagtgcagTTTGAGACATTTACTAATCATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTG
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atcattcctgagatgctagcagtgatgtggggtgaatgccc---aaagtgcctgttaacatagctagccagatctctaacagc--ttattttgcaatttc---tgtagATAGGGACATTTAATCATGCTATGAAAGATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGTAGTTCAACATTGTATCAAATTG
upper sequence: Vv16s0050g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G24450.1 (Glycine max), 3'ss of exon 5
-----ttggtgtgctcttttggaataagatgcattctttgtgaagagtccaattagttgcttgccaagatctgttatgacattcatgcttttattctcagtgcagTTTGAGACATTTACTAATCATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTG
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ttttcctgagatg-tcatcagtgatgtgaggtgaaatccccaaagtgcctgttaacatagccacctagatctcaaacagctt----acttttagaatttctgtagATTGGGACATTTAATCATGATATGAATGATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATGA
upper sequence: Vv16s0050g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G24440.1 (Glycine max), 3'ss of exon 5
ttggtgtgctcttttggaataagatgcattctttgtgaagagtccaattagttgcttgccaag---atctgttatgacatt-catgcttttattctcagtgcagTTTGAGACATTTACTAATCATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTG
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---ttttgtttttgttgtttcatacttctt-tctgagatgctatcagtgatatgatagcgtagctagcctgatctcaaacagcttatttttacaatttctgtagATAGGGACATTTAAATATGATATGAAAGAGGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAATTTG
upper sequence: Vv16s0050g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G29760.2 (Glycine max), 3'ss of exon 5
ttggtgtgctcttttggaataagatgcattctttgtgaagagtccaattagttgcttgccaagatctgttatgacattcatgcttttattctcagtgcagTTTGAGACATTTACTAATCATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTG
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----------gtttttgctttaccctcctatgccccaaagtgcctgttaacatagctagccagatctcaaaag-----cttacttttacaatttctgtagATTGGGACATTTAATCATGATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattagttgcttgccaagatctgttatgacattcatgcttttattctcagtgcagTTTGAGACATTTACTAATCATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTG
cttttattctc CT-rich tract
ttttattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggtgtgctcttttggaataagatgcattctttgtgaagagtccaattagttgcttgccaagatctgttatgacattcatgcttttattctcagtgcagTTTGAGACATTTACTAATCATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-tggtgtg
- - - - - - - -ggaataa
- - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat