1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atagaaaacatgtcatcttgtgtaatgtttccaacaatcttctatatgcctatcattaggtggtttctgaaggtttttttgtattacttggagctgttagGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAACCGGTTGAAGCACATTCTTCCAAAGCCCCTTCCTGAACCTCTTGCTGGAA
species | Vitis vinifera |
transcript | Vv16s0039g02760.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAG GAATTGGCACATAGGCAGCAANNNNNNNATTGGAAGAACTACAGGAATAACEST: gi|30130253|gb|CB915592.1|CB915592
genomic: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAGgtttgtttct ... gagctgttagGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAAC
EST: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAG GAATTGGCACATAGGCAGCAANNNNNNNATTGGAAGAACTACAGGAATAACEST: gi|110383073|gb|EC947422.1|EC947422
genomic: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAGgtttgtttct ... gagctgttagGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAAC
EST: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAG GAATTGGCACATAGGCAGCAANNNNNNNATTGGAAGAACTACAGGAATAACEST: gi|30132868|gb|CB918207.1|CB918207
genomic: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAGgtttgtttct ... gagctgttagGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAAC
EST: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAG GAATTGGCACATAGGCAGCAANNNNNNNATTGGAAGAACTACAGGAATAAC
genomic: TTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAGgtttgtttct ... gagctgttagGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAAC
atgcctatcattaggtggtttctgaaggtttttttgtattacttggagctgttagGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAACCGGTTGAAGCACATTCTTCCAAAGCCCCTTCCTGAACCTCTTGCTGGAA
tttttttgtattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagaaaacatgtcatcttgtgtaatgtttccaacaatcttctatatgcctatcattaggtggtttctgaaggtttttttgtattacttggagctgttagGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAACCGGTTGAAGCACATTCTTCCAAAGCCCCTTCCTGAACCTCTTGCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
atagaaa
- - - -acatgtc
- - - - - - - - - - - - - - - ccaacaa
- - - - - - - - - - - - - - - - - - - - - - tatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaagg