Sequence
atgc intronic sequence ATGC exonic sequence...gtatgatttcatgagtttttgcctctgaagacaagcatatgagaaccagttttcagctgcattagttttattatgtcacaatttcaatgtgatatttcagGCAAACAATTTGCGAGTCATGCTTTTGGGCATGGTTGATGATCCGCGTGTTGTACTCATCAAGCTTGCAGATCGTCTTCATAACATGAGAACAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G106931_T01 (Zea mays), 3'ss of exon 4
------gtatgatttcatgag---tttttgcctctgaagacaagcatatgagaaccagttttcagctgcattagttttattatgtcacaatttcaatgtgatatttcagGCAAACAATTTGCGAGTCATGCTTTTGGGCATGGTTGATGATCCGCGTGTTGTACTCATCAAGCTTGCAGATCGTCTTCATAACATGAGAACAAT
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atatcagcatcttctgacaaaactgttgtgagatgccagaaaagtatataa-aactgctttctgaaagccgtggtttgattatcc-----tcttgttgtcag---tcagGCAAATAATCTACGTGTTATGTTATTGGGGATGGTTGATGATCCTCGTGTGGTGCTCATCAAGCTGGCAGATCGCTTGCACAATATGCGGACAAT
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G01400.1 (Glycine max), 3'ss of exon 5
-gtatgatttcatgagtttttgcctctgaagacaag-catat--gagaaccagttttcagctgc-attagttttattatgtcacaatttcaatgtgatatttcagGCAAACAATTTGCGAGTCATGCTTTTGGGCATGGTTGATGATCCGCGTGTTGTACTCATCAAGCTTGCAGATCGTCTTCATAACATGAGAACAAT
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attaaaaaatgaccattctgagatttgtaaaacatgatatattggtggtggaactagcagcagagagtttttctgatatgctacattcttaatctgcta-----gGCAAGTAATTTACGAGTGATGCTTTTGGGAATGGTTGATGATCCACGTGTTGTGCTCATCAAGCTTGCAGATCGTCTTCACAACATGAGAACAAT
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G43930.1 (Glycine max), 3'ss of exon 5
gtatgatttcatgagttttt-gcctctgaagacaag-catat--gagaaccagttttcagctgc-attagttttattatgtcacaatttcaatgtgatatttcagGCAAACAATTTGCGAGTCATGCTTTTGGGCATGGTTGATGATCCGCGTGTTGTACTCATCAAGCTTGCAGATCGTCTTCATAACATGAGAACAAT
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attaaaaaatatgcattctgagatttttaaaacatgatatattggtggtggaattagcagcagagagtttttctgatatgctacattcttaatctggta-----gGCAAGTAATTTACGAGTGATGCTTTTGGGAATGGTTGATGATCCACGTGTTGTGCTCATCAAGCTTGCAGATCGTCTTCACAACATGAGAACAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccagttttcagctgcattagttttattatgtcacaatttcaatgtgatatttcagGCAAACAATTTGCGAGTCATGCTTTTGGGCATGGTTGATGATCCGCGTGTTGTACTCATCAAGCTTGCAGATCGTCTTCATAACATGAGAACAAT
attagttttattatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgatttcatgagtttttgcctctgaagacaagcatatgagaaccagttttcagctgcattagttttattatgtcacaatttcaatgtgatatttcagGCAAACAATTTGCGAGTCATGCTTTTGGGCATGGTTGATGATCCGCGTGTTGTACTCATCAAGCTTGCAGATCGTCTTCATAACATGAGAACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - -catgagt
- - - - - - - - - -tgcctct
- - - - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - - -agaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - -cagctgc