1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtaaataaaatcaaaaaatcgactttgatatcaaatgagaccatgaagtactagaagccatgaacttcttatgtgaaatgtgttgtttgtatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAAAGTCACCATCAGGGAAAATTTTAAGAAAAGACCTCAGAGCTAAACTAG
species | Vitis vinifera |
transcript | Vv16s0039g02040.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|110425483|gb|EC991868.1|EC991868
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|110699052|gb|EE077254.1|EE077254
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: CGGGTTTGAACTCCCTGAAGAAGCCTGTGAAA-AGTTCATATCAAAACCG GCTGTGTTCTACAAAAGACTGCCCAAGGEST: gi|110422395|gb|EC988717.1|EC988717
genomic: CGGGTTTGAACTCACTGAAGAGGC-TGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGG
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|110361934|gb|EC925440.1|EC925440
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCAAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|349826724|gb|FQ418815.1|FQ418815
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTTATGCCATTCCAEST: gi|110384288|gb|EC948716.1|EC948716
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|110388697|gb|EC953474.1|EC953474
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCAAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|352768957|gb|FQ468148.1|FQ468148
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|33404985|gb|CF210612.1|CF210612
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCAAAACAG GTTGT-TTCTACEST: gi|110413344|gb|EC979124.1|EC979124
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTAC
EST: GTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTTTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|87584666|gb|DY473744.1|DY473744
genomic: GTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACTCACTGAAGAGGCTGTGAAAGAGTTCATATCAAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|110376549|gb|EC941609.1|EC941609
genomic: ACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|51051534|gb|CO819105.1|CO819105
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCAAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAEST: gi|110362812|gb|EC926367.1|EC926367
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
EST: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCAAAACAG GTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
genomic: ACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGgtaacaaaaa ... tatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCA
gaagtactagaagccatgaacttcttatgtgaaatgtgttgtttgtatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAAAGTCACCATCAGGGAAAATTTTAAGAAAAGACCTCAGAGCTAAACTAG
ttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaataaaatcaaaaaatcgactttgatatcaaatgagaccatgaagtactagaagccatgaacttcttatgtgaaatgtgttgtttgtatcaaacagGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAAAGTCACCATCAGGGAAAATTTTAAGAAAAGACCTCAGAGCTAAACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- -aaataaa
- - - - - - -aaaaaat
- - - - - - - - - - - - - - - atcaaat
- - - - - - - - - - - - - - - - - - - - -ccatgaa