1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtcacacattgttcttgtccgttacatttcctcttgaaacttcttgtaatgttgacttgatcaaatagagtgctgaacatatctttcttgcagATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTTCTACCCAACTGGAGAAAGCATCCAAACTCCAAAAATCTAATTCCTCTCT
species | Vitis vinifera |
transcript | Vv16s0039g01850.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTTTCAAAGATCTGGCTGTACTGGTCCACGGACAAGGAACTATGATTG ATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTTEST: gi|110423567|gb|EC989914.1|EC989914
genomic: AATTTTCAAAGATCTGGCTGTACTGGTCCACGGACAAGGAACTATGATTGgtaagtcaca ... tttcttgcagATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTT
EST: AATTTTCAAAGATCTGGCTGTACTGGTCCACGGACAAGGAACTATGATTG ATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTT
genomic: AATTTTCAAAGATCTGGCTGTACTGGTCCACGGACAAGGAACTATGATTGgtaagtcaca ... tttcttgcagATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTT
acttcttgtaatgttgacttgatcaaatagagtgctgaacatatctttcttgcagATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTTCTACCCAACTGGAGAAAGCATCCAAACTCCAAAAATCTAATTCCTCTCT
tatctttctt CT-rich tract
atcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcacacattgttcttgtccgttacatttcctcttgaaacttcttgtaatgttgacttgatcaaatagagtgctgaacatatctttcttgcagATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTTCTACCCAACTGGAGAAAGCATCCAAACTCCAAAAATCTAATTCCTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA