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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggaataaaattagagaatcttaaatatacacactagagtgttgtattagaaatcttcaattgcttgtttcttatggacaaaatgtcctgtttatgaaacttctctttatatctacagGTCTTGGAAAAGACCCAACTCTCTTATGGCTGGAGGGAGATGCAGAAGCCTTAAGTTTTGATGATGATTCAATGGACGGTTATACAATTGCTTTTGGGAT

Basic information

species Vitis vinifera
transcript Vv16s0039g01590.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709114|gb|EE084301.1|EE084301
EST:     CATCAACCCAAGAATGCTAGATGTTGGTAAAAAGCGGGCCATGGAGCAAG                         GTCTTGGAAAAGACCCAACTCTCTTATGGCTGGAGGGAGATGCAAAAGCCT
genomic: CATCAACCCAAGAATGCTAGATGTTGGTAAAAAGCGGGCCATGGAGCAAGgtggaataaa ... atatctacagGTCTTGGAAAAGACCCAACTCTCTTATGGCTGGAGGGAGATGCAGAAGCCT
EST: gi|83274635|gb|DV938731.1|DV938731
EST:     CATCAACCCAAGAATGCTAGATGTTGGTAAAAAGCGCGCCATGGAGCAAG                         GTCTTGGAAAAGACCCAACTCTCTTATGGCTGGAGGGAGATGCAGAAGCCT
genomic: CATCAACCCAAGAATGCTAGATGTTGGTAAAAAGCGGGCCATGGAGCAAGgtggaataaa ... atatctacagGTCTTGGAAAAGACCCAACTCTCTTATGGCTGGAGGGAGATGCAGAAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtttcttatggacaaaatgtcctgtttatgaaacttctctttatatctacagGTCTTGGAAAAGACCCAACTCTCTTATGGCTGGAGGGAGATGCAGAAGCCTTAAGTTTTGATGATGATTCAATGGACGGTTATACAATTGCTTTTGGGAT
                                    cttctctttatatct  CT-rich tract
                                          tttatatcta  TA-rich tract