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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatccatatcatgcttttctattgaaaatctaaaataatgatttattttatgtgttctctgacccagatttgttcctcttcagATGACAAATTTCCTTAGTCCTGAGAACATCAAGGGTTTATCTGCTTTCTCAATGTTGCTTGCCATGATTGGTAATGGGCTTATGATTCCACGTGCACTTT

Basic information

species Vitis vinifera
transcript Vv16s0039g00700.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27583660|gb|CB006355.1|CB006355
EST:     CTGGATGGACTGCTACACTTCTCTTCATGTGGATGCCAGTTTCTCAAATG                         ATGACAAATTTCCTTAGTCCTGAGAACATCAAGGGTTTATCTGCTTTCTCA
genomic: CTGGATGGACTGCTACACTTCTCTTCATGTGGATGCCAGTTTCTCAAATGgtaatccata ... tcctcttcagATGACAAATTTCCTTAGTCCTGAGAACATCAAGGGTTTATCTGCTTTCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaaaataatgatttattttatgtgttctctgacccagatttgttcctcttcagATGACAAATTTCCTTAGTCCTGAGAACATCAAGGGTTTATCTGCTTTCTCAATGTTGCTTGCCATGATTGGTAATGGGCTTATGATTCCACGTGCACTTT
                            ctctgac  putative branch site (score: 3)
                                        tttgttcctcttc  putative PPT
     aataatgatttatttt  TA-rich tract