Sequence
atgc intronic sequence ATGC exonic sequence...aagctcattttatattcagaatgtgaaacacatgaaccattacttaattctaatgtgccacctgaagaccctaactaagaacttgttaattttgatgcagTTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os09g34920.1 (Oryza sativa), 3'ss of exon 2
aagctcattttatattcagaatgtgaaacacatgaaccattacttaattctaatgtgccacctgaagaccctaactaagaacttgttaattttgatgcagTTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCG
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-------------gtaggtaacactacactaaacacgcgttaattagttc-ggtg-gccaccgtcgtcccgccattg-----ctgacatcacccacccagGTACCTGAACACCGGCGACCCGAGGGGGAAGGACTGGGTGCCGCCGGAGTGCGACGTGTCGATCCGGCCGGGGTGGTTCTGGCACAAGAACGAGACGGCG
upper sequence: Vv16s0022g02170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ08766 (Selaginella moellendorffii), 3'ss of exon 2
aagctcattttatattcagaatgtgaaacacatgaaccattacttaattctaatgtgccacctgaagaccctaactaagaacttgttaattttgat-gcagTTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCG
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-------------------------------gtaagttgtcaagt--tgctggtg-acgagctgga---tctga-tcatccttggctgttcttgtttgtagGTATCTCAACCAGGGGGACGAGCACGGCAGCGACTGGGTACCACCCGAGTGTGATGTTTCGATCCGGACGGGATGGTTCTGGCACCGGAGCGAGCGTCCG
upper sequence: Vv16s0022g02170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ06423 (Selaginella moellendorffii), 3'ss of exon 2
aagctcattttatattcagaatgtgaaacacatgaaccattac-ttaattctaatgtgcc--acctgaagaccctaactaagaacttgttaattttgatgcagTTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCG
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-------------------------------gtaagttgtcaagttggtggtgacgagctggatctgatcatccttggct-gttcttgtt--------tgtagGTATCTCAACCAGGGGGACGAGCACGGCAGCGACTGGGTACCACCCGAGTGTGATGTTTCGATCCGGACGGGATGGTTCTGGCACCGGAGCGAGCGTCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattctaatgtgccacctgaagaccctaactaagaacttgttaattttgatgcagTTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCG
aacttgttaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagctcattttatattcagaatgtgaaacacatgaaccattacttaattctaatgtgccacctgaagaccctaactaagaacttgttaattttgatgcagTTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCG
- - - - - - - - cagaatg
- - - - - - - - - - - - gaaacac
- - - - - - - - - - - - - - - - - - ccattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gccacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctaac