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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattttctttccatgattgtcctattagaataatttctattttgagttaagagtacaaataaataacaatttcttaattttatatttcatttatttcatgtgtttgtaacaattacttctatattttcgtctgcttcttatgtgatgttgtcctgtgttttgtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGTAATGAAAAAATGAAGGCCAGTACTAATGTTAGGCATATTGTTCTTCCCT

Basic information

species Vitis vinifera
transcript Vv16s0022g02110.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G38680.1 (Glycine max), 3'ss of exon 5
gtacattttctttccatgattgtcctattagaataatttctattttgagttaagagtacaaataaataacaatttcttaattttatatttcatttatttcatgtgtttgtaacaattacttctatattttcgtctgcttcttatgtgatgttgtcctgtgttttgtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGTAATGAAAAAATGAAGGCCAGTACTAATGTTAGGCATATTGTTCTTCCCT
                                                                                   |||  |||  |    | ||   ||  | | | ||| ||  || || |  |  |  ||||   | ||| |   |||  |||  |  ||||||||| |||  |  ||| | || |||     |||||| || |||||||| || |||  ||||||||||||||| || ||||||||||||||||||||||| |
----------------------------------------------------------------------------------gtatgcttctatgtgatgattacttccttatactta-ttggatgttatatttagggtctt---taatggtacgctgcttttatttgtgccagATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCTT

upper sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 5
gtacattttctttccatgattgtcctattagaataatttctattttgagttaagagtacaaataaataacaatttcttaattttatatttcatttatttcatgtgtttgtaacaattacttctatattttcgtctgcttcttatgtgatgttgtcctgtgttttgtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGTAATGAAAAAATGAAGGCCAGTACTAATGTTAGGCATATTGTTCTTCCCT
                                                                                   |||  |||  |    |  |   ||  | | | ||| ||  || || |  |  |  ||||   | |||||  |  || | |  |  ||||||||| || | || ||| | || |||     |||||| || |||||||| || |||  ||||||||||||||| |  ||||||||||||||||||||||| |
----------------------------------------------------------------------------------gtatgcttctatgcaatggttacttctttatactta-ttggatgttatatttagggtctt---taatgttacctggtttctatttgtgccagATTGCTGCAAGATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCATCAATGTTAGGCATATTGTTCTTCCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720948|gb|FC070676.1|FC070676
EST:     AAGTTCAGACACTACTTTTCAGTGCAACATTACCTGGCTGGGTGAAAGAA                         ATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGT
genomic: AAGTTCAGACACTACTTTTCAGTGCAACATTACCTGGCTGGGTGAAAGAAgtacattttc ... gtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGT
EST: gi|161721595|gb|FC070805.1|FC070805
EST:     AAGTTCAGACACTACTTTTCAGTGCAACATTACCTGGCTGGGTGAAAGAA                         ATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGT
genomic: AAGTTCAGACACTACTTTTCAGTGCAACATTACCTGGCTGGGTGAAAGAAgtacattttc ... gtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGT
EST: gi|294964618|gb|GW838421.1|GW838421
EST:     AAGTTCAGACACTACTTTTCAGTGCAACATTACCTGGCTGGGTGAAAGAA                         ATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGT
genomic: AAGTTCAGACACTACTTTTCAGTGCAACATTACCTGGCTGGGTGAAAGAAgtacattttc ... gtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctatattttcgtctgcttcttatgtgatgttgtcctgtgttttgtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGTAATGAAAAAATGAAGGCCAGTACTAATGTTAGGCATATTGTTCTTCCCT
                                         ttttgtatt  TA-rich tract