Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaaagaatactattttctctcatgaagttctccaagacttgaagaagaaagacaattctgacatttccaccatttttcttgcagACAAATGGTGGGGGATGCTTTGAGACTGCCTCGATTACGGCATAATATATATGTTTGGGAGTTTGATATGTTGGGTATATATACTTTTGTCGAAAAGTAT

Basic information

species Vitis vinifera
transcript Vv15s0107g00320.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122691920|gb|EC985310.1|EC985310
EST:     GACGATTCTGATATTTCCTTGAATTTGTGAATGGGAAACCCACTCAAAAG                         ACAAATGGTGGGGGATGCTTTGAGACTGCCTCGATTACGGCATAATATATA
genomic: GACGATTCTGATATTTCCTTGAATTTGTGAATGGGAAACCCACTCAAAAGgtaaaaaaaa ... tttcttgcagACAAATGGTGGGGGATGCTTTGAGACTGCCTCGATTACGGCATAATATATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaagacttgaagaagaaagacaattctgacatttccaccatttttcttgcagACAAATGGTGGGGGATGCTTTGAGACTGCCTCGATTACGGCATAATATATATGTTTGGGAGTTTGATATGTTGGGTATATATACTTTTGTCGAAAAGTAT
                          ttctgac  putative branch site (score: 2)
                                  tttccaccatttttct  CT-rich tract
                                          atttttctt  TA-rich tract