1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttctacacaacctatcagtttgtgtaagagcctgacttcatcctttgtacaccaatatcatcattggtttttgtgatcaaatctcttgttttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAAGGAATGCAACTTTCCAACGGGTTTTGCAGACAGGCAACGAGTTTGATC
species | Vitis vinifera |
transcript | Vv15s0048g01980.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351052819|gb|FQ456547.1|FQ456547
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACACAATTCTCTACGCACGACATGCAGATCAGEST: gi|351038425|gb|FQ461117.1|FQ461117
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATTCAEST: gi|352786554|gb|FQ479761.1|FQ479761
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGAT-CA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351044672|gb|FQ443203.1|FQ443203
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGGTTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|110369076|gb|EC933221.1|EC933221
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351053350|gb|FQ455686.1|FQ455686
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|352776514|gb|FQ474816.1|FQ474816
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351033986|gb|FQ463041.1|FQ463041
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CANGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATATCAAATTTCTCTACGCACGACATGCAAATCAAEST: gi|110418008|gb|EC984114.1|EC984114
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351045624|gb|FQ440809.1|FQ440809
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: TAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|110378199|gb|EC943318.1|EC943318
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|352798742|gb|FQ478377.1|FQ478377
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACCGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|352791446|gb|FQ481025.1|FQ481025
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351038112|gb|FQ465229.1|FQ465229
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAAACAAAAT-CTCTACGCAEST: gi|349823325|gb|FQ402524.1|FQ402524
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAA-CAAAATTCTCTACGCA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAATTTCTCTACGCACGAEST: gi|352794164|gb|FQ479406.1|FQ479406
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACCGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAAATCTCTAEST: gi|351045527|gb|FQ440712.1|FQ440712
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351051967|gb|FQ450658.1|FQ450658
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAEST: gi|351054564|gb|FQ462671.1|FQ462671
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACCGACTACCAAATACAG GCTCGGATCGACTCACATAACAAAAATCTCTACGCACGACATGCAGATCAAEST: gi|351052534|gb|FQ456382.1|FQ456382
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|349820411|gb|FQ406967.1|FQ406967
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACCAAATTCTCTACEST: gi|351056545|gb|FQ442373.1|FQ442373
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTAC
EST: CAGGGCAGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|26266519|gb|CA817582.1|CA817582
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351047650|gb|FQ455047.1|FQ455047
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACCGACNACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|110367302|gb|EC931231.1|EC931231
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAEST: gi|351023589|gb|FQ432972.1|FQ432972
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
EST: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAG GCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
genomic: CAGGGCTGGAGAAAGAGCTTGAAGCTTTGATTACTGACAACCAAATACAGgtattgtttc ... tttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAA
ttgtacaccaatatcatcattggtttttgtgatcaaatctcttgttttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAAGGAATGCAACTTTCCAACGGGTTTTGCAGACAGGCAACGAGTTTGATC
tctcttgttttcat CT-rich tract
aatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctacacaacctatcagtttgtgtaagagcctgacttcatcctttgtacaccaatatcatcattggtttttgtgatcaaatctcttgttttcatgcagGCTCGGATCGACTCACATAACAAAATTCTCTACGCACGACATGCAGATCAAAGGAATGCAACTTTCCAACGGGTTTTGCAGACAGGCAACGAGTTTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - cacaacc
- - - - - - - - - - - - - - -agcctga
- - - - - - - - - - - - - - - - - - - - - - - - -acaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaat