Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttatattctaatgatcatttgagtaaatctagttcatcaaccttcagcatgagtttggctgttgactgaatttggaaatagcttcttttgttagcatttttttatttcttcttttctgtgtatgtaaatttgaatgatggtcaatggtgagttgtctcaaatgttccatcatatgggtttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G08700.1 (Glycine max), 3'ss of exon 5
gtaagtttatattctaatgatcatttgagtaaatctagttcatcaaccttcagcatgagtttggctgttgactgaatttggaaatagcttcttttgttagcatttttttatttcttcttttctgtgtatgtaaatttgaatgatggtcaatggtgagttgtctcaaatgttccatcatatgggtttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG
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----gtttgtgtttctatagac---tgaaaagccatacaacat-aagatgcac--tgggcttaatggtcttctccattgaatgttggccattaatacta-cattcagaactgtcttatttccta-----gtaatgttccac-----ccactaaagagtt------aatgcttaa----atagttttgcttcagGTTAAACGGCGAAAGCTGCTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAG
upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G18680.1 (Glycine max), 3'ss of exon 3
gtaagtttatattctaatgatcatttgagtaaatctagttcatcaaccttcagcatgagtttggctgttgactgaatttggaaatagcttcttttgttagcatttttttatttcttcttttctgtgtatgtaaatttgaatgatggtcaatggtgagttgtctcaaatgttccatcatatgggtttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG
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----gtttatgtttctatagac---tgaaaagccatacaacat-aagatgcac--tgggcttaatggtcttctccattgaatgttggccattaatacta-cgttcagaactgtcttatttccta-----gtaatgttccac-----ccactaaagagtt------aatgcttaa----atagttttgcttcagGTTAAACGGCGAAAGCTACTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAG
upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G45690.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtttatattctaatgatcatttgagtaaatctagttcatcaaccttcagcatgagtttggctgttgactgaatttggaaatagcttcttttgttagcatttttttatttcttcttttctgtgtatgtaaatttgaatgatggtcaatggtgagttgtctcaaatgttccatcatatgggtttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG
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--------------------------------------------------------------------------------------------------------------gttagaaatctct-tggacctcaat----acaacagt-aatgttgaaccgatttaactcatat-tcttgttacttc--ttcagCTGAGGAGACGAAAACTGATATGGGCATTGTACCTCATGAGAGATCCATTCTTCACCAAGTACACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110372309|gb|EC936464.1|EC936464EST: ATAATAGGAAACATAAACAATTTCATATATCAGCCTCCGAAAAGGACGAA TTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTC
genomic: ATAATAGGAAACATAAACAATTTCATATATCAGCCTCCGAAAAGGACGAAgtaagtttat ... tttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTC
EST:
gi|110418220|gb|EC984349.1|EC984349EST: ATAATAGGAAACATAAACAATTTCATATATCAGCCTCCGAAAAGGACGAA TTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTC
genomic: ATAATAGGAAACATAAACAATTTCATATATCAGCCTCCGAAAAGGACGAAgtaagtttat ... tttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgatggtcaatggtgagttgtctcaaatgttccatcatatgggtttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG
gtttgat putative branch site (score: 5)
tttgatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttatattctaatgatcatttgagtaaatctagttcatcaaccttcagcatgagtttggctgttgactgaatttggaaatagcttcttttgttagcatttttttatttcttcttttctgtgtatgtaaatttgaatgatggtcaatggtgagttgtctcaaatgttccatcatatgggtttgatatagTTAAAAAGAAGGAAGCTGTTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG