Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttcttaaagcttgttgctttgttgatacatttgctccactggttaatcttccatgtgtgcctgctctaaaatccaaactacttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT

Basic information

species Vitis vinifera
transcript Vv15s0048g00900.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G39420.2 (Glycine max), 3'ss of exon 3
gtgtgttcttaaagcttgttgctttgttgatacatttgctccactggttaatcttccatgtgtgcctgctctaaaatccaaactacttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT
||| | |  | ||  | |    ||| |||| | ||||| | |      |    |  |     ||||| |  |||||   |   |   | |  ||||||||||||||||  | |||||  |||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||| 
gtgaggttctgaaattggcgcttttcttgaaatatttgattcttcaactttattgactgacatgcctacattaaaaaatatgatttcttt-tagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACC

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G60820.1 (Arabidopsis thaliana), 3'ss of exon 5
------gtgtgttcttaaagcttgttgctttgttgatacatttgctccactggttaatcttccatgtgtgcctgctctaaaatccaaactacttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT
         | ||||| |  | || |  |    |    ||||      |     | |       ||| ||| |  |      ||           || ||||| |    || || || || ||  | ||||||||||| || || |||||||| || |||||||| || ||||||||||| ||||||
gtttgttgatattcttcattcgtgcttttggcgtttcgcattgtaaagataaaatgaatcgttctgt-tgcttatttgttcgtcttctgccaccatgtagGATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACT

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G60820.2 (Arabidopsis thaliana), 3'ss of exon 5
------gtgtgttcttaaagcttgttgctttgttgatacatttgctccactggttaatcttccatgtgtgcctgctctaaaatccaaactacttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT----
         | ||||| |  | || |  |    |    ||||      |     | |       ||| ||| |  |      ||           || ||||| |    || || || || ||  | ||||||||||| || || |||||||| || |||||||| || ||||||||||| ||||||    
gtttgttgatattcttcattcgtgcttttggcgtttcgcattgtaaagataaaatgaatcgttctgt-tgcttatttgttcgtcttctgccaccatgtagGATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408415|gb|CF214042.1|CF214042
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110701338|gb|EE078798.1|EE078798
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|32460612|gb|CD801786.1|CD801786
EST:     CCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAA
genomic: CCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACT-C-CTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAA
EST: gi|110714206|gb|EE090847.1|EE090847
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110406409|gb|EC971980.1|EC971980
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTTTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110367163|gb|EC931089.1|EC931089
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110686517|gb|EE064245.1|EE064245
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110731955|gb|EE106817.1|EE106817
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|351056417|gb|FQ454278.1|FQ454278
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTTTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|351040709|gb|FQ438253.1|FQ438253
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAACCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|161712237|gb|FC061611.1|FC061611
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAA
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAA
EST: gi|351016321|gb|FQ446181.1|FQ446181
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|30133256|gb|CB918595.1|CB918595
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|22008081|gb|BQ793115.1|BQ793115
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGTCTACTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110708375|gb|EE085848.1|EE085848
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|22011829|gb|BQ796863.1|BQ796863
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110690363|gb|EE067399.1|EE067399
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|71867003|gb|DT016058.1|DT016058
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110405149|gb|EC970684.1|EC970684
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110722612|gb|EE098996.1|EE098996
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110694257|gb|EE071215.1|EE071215
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110688266|gb|EE066618.1|EE066618
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110687257|gb|EE064508.1|EE064508
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110705826|gb|EE083120.1|EE083120
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|30132002|gb|CB917341.1|CB917341
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|77584643|gb|DV221402.1|DV221402
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|29784216|gb|CB344664.2|CB344664
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAACCT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110701457|gb|EE079053.1|EE079053
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110695795|gb|EE074220.1|EE074220
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110379243|gb|EC944426.1|EC944426
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110420310|gb|EC986580.1|EC986580
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|22011827|gb|BQ796861.1|BQ796861
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|28965578|gb|CB344611.1|CB344611
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110715977|gb|EE090554.1|EE090554
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110428717|gb|EC995196.1|EC995196
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110385775|gb|EC950328.1|EC950328
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110701052|gb|EE078242.1|EE078242
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110707254|gb|EE083492.1|EE083492
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110420910|gb|EC987197.1|EC987197
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110689903|gb|EE066533.1|EE066533
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|34319070|gb|CF371824.1|CF371824
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110686704|gb|EE064648.1|EE064648
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|30131372|gb|CB916711.1|CB916711
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|30135723|gb|CB921061.1|CB921061
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGA
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGA
EST: gi|110690981|gb|EE068563.1|EE068563
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|351031033|gb|FQ444860.1|FQ444860
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTTTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110701108|gb|EE078347.1|EE078347
EST:     TCTTGGACAACCAACTGATATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|34415837|gb|CF414591.1|CF414591
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110700367|gb|EE078323.1|EE078323
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110688122|gb|EE066314.1|EE066314
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|33408674|gb|CF214301.1|CF214301
EST:     TTTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTTTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110401204|gb|EC967806.1|EC967806
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110398016|gb|EC964077.1|EC964077
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|351018518|gb|FQ424625.1|FQ424625
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|77588152|gb|DV223287.1|DV223287
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
EST: gi|110722795|gb|EE099369.1|EE099369
EST:     TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTG                         GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT
genomic: TCTTGGACAACCAACTGAAATCTCCCAGCCCTCTTTTATTGCCTGCTCTGgtgtgttctt ... acttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccactggttaatcttccatgtgtgcctgctctaaaatccaaactacttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT
                             ctctaaa  putative branch site (score: 3)
        ttaatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgttcttaaagcttgttgctttgttgatacatttgctccactggttaatcttccatgtgtgcctgctctaaaatccaaactacttgtgcagGATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG