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gtaaacttctccttagttactgttatttccatctcttttgaggagggaactccttactcatgggttaagaatcctttctgaatgatccatttgttcttccattgaatgtatggactgttttttttatcttgtagGATGCTTCAGATGAGTTTCTAAGTACAGAGGGCACTGGTTCTAGTGGTATGGTGGATATCAACACGACATCAGCAGTTCTTTTTGTTGTGATCGCTTCAT
species | Vitis vinifera |
transcript | Vv15s0046g02460.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCATGGAGTGCCAGAGAAGCAGCTAATGAGCAGGACAAGCTATTAAAG GATGCTTCAGATGAGTTTCTAAGTACAGAGGGCACTGGTTCTAGTGGTATGEST: gi|161707763|gb|FC056428.1|FC056428
genomic: CTGCATGGAGTGCCAGAGAAGCAGCTAATGAGCAGGACAAGCTATTAAAGgtaaacttct ... tatcttgtagGATGCTTCAGATGAGTTTCTAAGTACAGAGGGCACTGGTTCTAGTGGTATG
EST: CTGCATGGAGTGCCAGAGAAGCAGCTAATGAGCAGGACAAGCTATTAAAG GATGCTTCAGATGAGTTTCTAAGTACAGAGGGCACTGGTTCTAGTGGTATG
genomic: CTGCATGGAGTGCCAGAGAAGCAGCTAATGAGCAGGACAAGCTATTAAAGgtaaacttct ... tatcttgtagGATGCTTCAGATGAGTTTCTAAGTACAGAGGGCACTGGTTCTAGTGGTATG
gaatgatccatttgttcttccattgaatgtatggactgttttttttatcttgtagGATGCTTCAGATGAGTTTCTAAGTACAGAGGGCACTGGTTCTAGTGGTATGGTGGATATCAACACGACATCAGCAGTTCTTTTTGTTGTGATCGCTTCAT
ctgttttttttatctt CT-rich tract
ttttttttatcttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacttctccttagttactgttatttccatctcttttgaggagggaactccttactcatgggttaagaatcctttctgaatgatccatttgttcttccattgaatgtatggactgttttttttatcttgtagGATGCTTCAGATGAGTTTCTAAGTACAGAGGGCACTGGTTCTAGTGGTATGGTGGATATCAACACGACATCAGCAGTTCTTTTTGTTGTGATCGCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA