Sequence
atgc intronic sequence ATGC exonic sequence...aacaataattttcataagatgctgcatgtaaattatatgtagtcatactgatgtttatattctttagggaatatagtataattatattttgatgatgcagATAAATAGAAGAATGGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os03g03460.1 (Oryza sativa), 3'ss of exon 4
aacaataattttcataagatgctgcatgtaaattatatgtagtcatactgatgtttata-ttctttagggaatatagtataattatattttg-atgatgcagATAAATAGAAGAATGGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTG---GAGGAATGTAGGTTGGTCAACT
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-ccagtagtaaa-atgggttgagaaacagaagtgttttgatttcttatcgacacccagggttgctaatgttctaacatttaacttttttaaatgtgctgaagATTAATAGGAGGATGGAGTTTGTGTTTGCAAGTCATACATTTGATGTTTGGGAGAGCTGGATGCTGGAGGGGTCCTTGTTGGAGGGTTGCAAACTTATCA---
upper sequence: Vv15s0046g02250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G47240.1 (Glycine max), 3'ss of exon 5
aacaataattttcataagatgctgcatg-taaattatatgtagtcatactgatgtttatattctttagggaatatagtataattat--attttgatgatgcagATAAATAGAAGAATGGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACT-
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aatga-aagctaaatatttagatatatggctaactctaccatgttatattacactgcaaaca---tgatgcccttaatttggttgtaaactgtcattttgcagaTCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTG
upper sequence: Vv15s0046g02250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G39090.1 (Glycine max), 3'ss of exon 5
-aacaataattttcataagatgctgcatg-taaattatatgtagtcatactgatgtttatattctttagggaatatagtataattata--ttttgatgatgcagATAAATAGAAGAATGGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACT
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caatga-aagttaaatatttagatatatgactaactctactatgttatattaccctgcaaacac---aaggcccttaatttggttataaactgtcattttgcagATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACT
upper sequence: Vv15s0046g02250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G01510.1 (Arabidopsis thaliana), 3'ss of exon 5
aacaataattttcataagatgctgcatgtaaattatatgtag-tcatactgatgtttatattctttagggaatatagtataattatattttgatgatgcagATAAATAGAAGAATGGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACT
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----gtagctcttacattagagagtgttacttccattggtaactcaatgttgctcttatggaatctaaaagtggttgtgtcatgggtgtgtgtgtgtgcagATCAATAGAAGAATGGAGTTTGTGTTTGCTAGCCATAGTTTTGACGTGTGGGAGAGTTGGAGTCTAGAAGGTTCTCTGGACGAATGTCGGCTTGTTAACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactgatgtttatattctttagggaatatagtataattatattttgatgatgcagATAAATAGAAGAATGGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACT
tttatattctttaggg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacaataattttcataagatgctgcatgtaaattatatgtagtcatactgatgtttatattctttagggaatatagtataattatattttgatgatgcagATAAATAGAAGAATGGAATTTGTATTTGCCAGTCACAGCTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTTTGGAGGAATGTAGGTTGGTCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
-acaataa
- - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - -catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaata