Sequence
atgc intronic sequence ATGC exonic sequencegttaatctcttgaaagctttttggaaaacatttctttatattcctcttggattagggtcatcatctttctaactgtaaactggaattactgaatgataattgcagGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAGGAAGTCGTGGACCCTAAGTTACCTGAGATGCCTTCTTCAAAAGCACTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G47170.1 (Glycine max), 3'ss of exon 5
gttaatctcttgaaagctttttggaaaacatttctttatattcctcttggattagggtcatcatctttctaactgtaaactggaattactgaatgataattgcagGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAGGAAGTCGTGGACCCTAAGTTACCTGAGATGCCTTCTTCAAAAGCACTCA-
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---------ttagaggccctcgccaataaaagaccatagttaacatttatgctatcttctctcttttttgggct---aactatgcatgttgga--acaattacaggTTAATTTAATAGAATGGTTGAAGACTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCTCTTAA
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G39160.1 (Glycine max), 3'ss of exon 5
gttaatctcttgaaagctttttggaaaacatttctttatattcctcttggattagggtcatcatctttctaactgtaaactggaattactgaatgataattgcagGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAGGAAGTCGTGGACCCTAAGTTACCTGAGATGCCTTCTTCAAAAGCACTCA
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--------gttagaggccctcaccaataaaagaccatagttaacatttatgctatcttctctcttttttgggct---aactatgcatgttgga--acaattacagGTTAATTTAATAGAATGGTTGAAGACTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATTTTCAAAGGCTCTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377663|gb|EC942742.1|EC942742EST: AGATAATTTCAGGCAGAAATCCTGTTGATTATAGCCAAGCACCTGGAGAG GTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAG
genomic: AGATAATTTCAGGCAGAAATCCTGTTGATTATAGCCAAGCACCTGGAGAGgttaatctct ... ataattgcagGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attagggtcatcatctttctaactgtaaactggaattactgaatgataattgcagGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAGGAAGTCGTGGACCCTAAGTTACCTGAGATGCCTTCTTCAAAAGCACTCA
ttctaac putative branch site (score: 1)
aatgataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaatctcttgaaagctttttggaaaacatttctttatattcctcttggattagggtcatcatctttctaactgtaaactggaattactgaatgataattgcagGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAGGAAGTCGTGGACCCTAAGTTACCTGAGATGCCTTCTTCAAAAGCACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG