1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttggttttagatctttgggaaaaatttcttaaattatactattcttattattggagttctatgtgcttatttatgctcattttttccttttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCCGTTTGTCCAAGGCCTTTTGTTTTTGATTTCGAGCAACCATC
species | Vitis vinifera |
transcript | Vv15s0046g02010.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATEST: gi|352764716|gb|FQ471776.1|FQ471776
genomic: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCAT
EST: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGEST: gi|110381451|gb|EC934491.1|EC934491
genomic: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATG
EST: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGEST: gi|30329963|gb|CD013225.1|CD013225
genomic: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATG
EST: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGEST: gi|30134779|gb|CB920117.1|CB920117
genomic: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATG
EST: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGEST: gi|351046083|gb|FQ441466.1|FQ441466
genomic: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATG
EST: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCCAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATACTTEST: gi|110399790|gb|EC966316.1|EC966316
genomic: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTT
EST: AGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGEST: gi|26258173|gb|CA809236.1|CA809236
genomic: AGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATG
EST: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAG TTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATG
genomic: TGATTTGCTAGAAAAAATGCTTGTATTTGATCCAAACAGGCGCATTACAGgtaagttctg ... ttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATG
ttattattggagttctatgtgcttatttatgctcattttttccttttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCCGTTTGTCCAAGGCCTTTTGTTTTTGATTTCGAGCAACCATC
tttatgctcatttttt CT-rich tract
ttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttttagatctttgggaaaaatttcttaaattatactattcttattattggagttctatgtgcttatttatgctcattttttccttttgtttgcagTTGAAGGGGCACTGTCTCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCCGTTTGTCCAAGGCCTTTTGTTTTTGATTTCGAGCAACCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgc