Sequence
atgc intronic sequence ATGC exonic sequence...ctaccatgtggtttggaatgaataaacagtttgtgctgccgtttaatctgattcaatgaacccttttctatattttattggattctcttattgattatagGGAAATGGATTATGATGGTATAGTGCTAGAATCTTGGTCGAGGTGGGCAGCCTATGGTATCTTGCATGATCCAGTGATGAGGAACATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g01080.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G41760.1 (Glycine max), 3'ss of exon 5
ctaccatgtggtttggaatgaataaacagtttgtgctgccgtttaatctgattcaatgaacccttttctatattttattggattctcttattgat-------tatagGGAAATGGATTATGATGGTATAGTGCTAGAATCTTGGTCGAGGTGGGCAGCCTATGGTATCTTGCATGATCCAGTGATGAGGAACATG
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-------gaagttgttcatggaagcaagccttcagataaatcagatccatatatgaagcactccctttgtgctttgatttgcttttcatgtgaatgttcttctgtagGGAAATGGGATATGATGGTATTGTTTTGGAATCTTGGTCAAGGTGGGCAGCTTATGGTATCTTGCATGATCCAAGCATGCGGAATTTG
upper sequence: Vv15s0046g01080.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G01040.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------ctaccatgtggtttggaatgaataaacagtttgtgctgccgtttaatctgattcaatgaacccttttctatattttattgg-attctcttattga-ttatagGGAAATGGATTATGATGGTATAGTGCTAGAATCTTGGTCGAGGTGGGCAGCCTATGGTATCTTGCATGATCCAGTGATGAGGAACATG
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gtaagggtctcccaaagctctacaattcctgtatatttcatgctc--tgaaaaggatgaatttct-ttacattagagcttgtgaattttaacacttaccttgtcatcatgtttgccttgaactctagGGAAATGGAATACAATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGCGTTTTGCATGACCCTGATTTGCGGAAAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctgattcaatgaacccttttctatattttattggattctcttattgattatagGGAAATGGATTATGATGGTATAGTGCTAGAATCTTGGTCGAGGTGGGCAGCCTATGGTATCTTGCATGATCCAGTGATGAGGAACATG
tattgat putative branch site (score: 3)
ttctcttatt CT-rich tract
ttttctatattttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaccatgtggtttggaatgaataaacagtttgtgctgccgtttaatctgattcaatgaacccttttctatattttattggattctcttattgattatagGGAAATGGATTATGATGGTATAGTGCTAGAATCTTGGTCGAGGTGGGCAGCCTATGGTATCTTGCATGATCCAGTGATGAGGAACATG
- - catgtgg
- - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - gctgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - -caatgaa