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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgcaactgaattgcatcacgtttaactctaatggttattcttccttggagctgaatcaattgttcttatttttcagTTCTCTGGGACAGAACCTCAAAACAAGCACTTTCATCGAGGAGATCTTCTTTGCTGTGTTTATCTCCATCTTTGGATTGGTTTTATTTTCACTACTCATT

Basic information

species Vitis vinifera
transcript Vv15s0046g00980.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110356617|gb|EC919575.1|EC919575
EST:     TTCCAAAATAAATTCTTTTACTGCTTTTGGTGGGGTCTGAGAAATCTTAG                         TTCTCTGGGACAGAACCTCAAAACAAGCACTTTCATCGAGGAGATCTTCTT
genomic: TTCCAAAATAAATTCTTTTACTGCTTTTGGTGGGGTCTGAGAAATCTTAGgttcgtgcaa ... tatttttcagTTCTCTGGGACAGAACCTCAAAACAAGCACTTTCATCGAGGAGATCTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactctaatggttattcttccttggagctgaatcaattgttcttatttttcagTTCTCTGGGACAGAACCTCAAAACAAGCACTTTCATCGAGGAGATCTTCTTTGCTGTGTTTATCTCCATCTTTGGATTGGTTTTATTTTCACTACTCATT
    ctctaat  putative branch site (score: 3)
                                      ttgttcttatttttc  putative PPT
                                    aattgttcttattttt  TA-rich tract