1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taacggaagtaattttttgcttatgtgcggaagagattcttattttattttgtagctgatgtggtaacattctgttactttaatcaaagttcatttgcagGCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAG
species | Vitis vinifera |
transcript | Vv15s0024g01470.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGTGCAAGTTGTTTCCTGCAGATGTGCAGATTCAATCAAAATATCTTTT GCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACTEST: gi|110373786|gb|EC938134.1|EC938134
genomic: GAGTGCAAGTTGTTTCCTGCAGATGTGCAGATTCAATCAAAATATCTTTTgtaggttttc ... tcatttgcagGCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACT
EST: GAGTGCAAGTTGTTTCCTGCAGATGTGCAGATTCAATCAAAATATCTTTT GCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACTEST: gi|110375221|gb|EC940185.1|EC940185
genomic: GAGTGCAAGTTGTTTCCTGCAGATGTGCAGATTCAATCAAAATATCTTTTgtaggttttc ... tcatttgcagGCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACT
EST: TGCAGATGTGCAGATTCAATCAAAATATCTTTT GCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACT
genomic: TGCAGATGTGCAGATTCAATCAAAATATCTTTTgtaggttttc ... tcatttgcagGCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACT
tattttgtagctgatgtggtaacattctgttactttaatcaaagttcatttgcagGCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAG
ttcattt CT-rich tract
ttactttaatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacggaagtaattttttgcttatgtgcggaagagattcttattttattttgtagctgatgtggtaacattctgttactttaatcaaagttcatttgcagGCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAG
-aacggaa
- - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - -gaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa