Sequence
atgc intronic sequence ATGC exonic sequencegttctcatacaagcatatttaattgttctttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcagTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 9
gttctcatacaagcatatttaattgttctttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaatt-cattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcagTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATG
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-gtcagatgtcagtttctcaggctgtttaattc--tctgctgatattttgtgcctgggctagac--agtccctttgaggtcttacagtctttt--tctcatact--------gcctttgttgggggatgaatttggtccatatt-tgtcttgcagTTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTAGTTGCAGGATCACCTTTGCGCACATTATGCCTTCTAATTGCTGGGCAACAAGCTGAAA
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G41800.1 (Glycine max), 3'ss of exon 6
gttctcatacaagcatatttaattgttctttccattcctttaccatatttgaattggctcaatcctgatctag-cagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcagTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATG
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-----------gtcagatgtca--gtttttcaggctgtttaattgtctgctgat-atttcatgcctgggctagacagtccctttgaggtcttacat-tggttttttcatacggcctttgttgggggttgaatttgttgcatatt-tggcttgcagTTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTGGTTGCAGGGTCACCTTTGCGCACTTTATGCCTTCTAATTGCTGGGCAACCTGCTGAAG
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G03580.1 (Glycine max), 3'ss of exon 9
gttctcatacaagcatatttaattgtt---ctttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcagTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATG
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-gtcagatgtcagttttttaggctgtttaattctctgctgatatttcatgccttgaccaga-cagtccctttgaggtattacagttgttttctcatatggc---ctttgttgggggttgaatttggtgaatatttggctt-------------gcagTTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTGATTGCAGGGTCACCTTTGCGCACATTATGCCTTCTAATTGCTGGGCAACCTGCTGAAG
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G41790.1 (Glycine max), 3'ss of exon 8
gttctcatacaagcatatttaattgttctttccattcctttaccatatttgaattggctcaatcctgatctag-cagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcagTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATG
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-----------gtcagacgcca--gtttttcaggctgtttaattgtctgctgat-atttcatgcctgagctagacagtccctttgaggtcttacagtctttttctcatactgcctttgttgggggatgaatttggtccatatttggct--tgcagTTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTGGTTTCAGGGTCACCTTTGCGCACATTATGCCTTCTAATTGCTGGGCAACAAGCTGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcagTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATG
ctctcttgtttccttt CT-rich tract
atttcaatttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctcatacaagcatatttaattgttctttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcagTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG