Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagttctaagatttgtctttcgtttgtctgttctttaaagtccttgaagtgtctgtattttcataacctatggtttctttaacttggaattttgtcctgtaatttttctcatacatgcaacacaattgttttcatttctgacagCTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG

Basic information

species Vitis vinifera
transcript Vv15s0021g02230.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G110626_T01 (Zea mays), 3'ss of exon 5
gtgagtagttctaagatttgtctttcgtttgtctgttctttaaagtccttgaagtgtctgtattttcataacctatggtttctttaacttggaattttgtcctgtaatttt---tctcatacatgcaacacaattgttttcatttctgacagCTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG
                              ||  ||| |   ||||| | |  ||| |||||      ||   | ||  ||  |||||| |  ||||       | | | |   |  | |   || ||     ||  ||    ||||  |||||||||||| | ||||| ||||||||||| || ||||||||||| || |||
------------------------------gtacgttatc--aagtc-tcgctgtggctgta-----gtagtatttgaatt--ttaactggtcatttcacaagatgactatagcttacctttctggaatgtttttccttcatattctaccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAATTGGCAGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719721|gb|EE095097.1|EE095097
EST:     ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGG                         CTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG
genomic: ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGGgtgagtagtt ... tttctgacagCTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG
EST: gi|349825285|gb|FQ418006.1|FQ418006
EST:     ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGG                         CTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCTGTAAAG
genomic: ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGGgtgagtagtt ... tttctgacagCTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG
EST: gi|110691850|gb|EE070424.1|EE070424
EST:     ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGG                         CTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG
genomic: ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGGgtgagtagtt ... tttctgacagCTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG
EST: gi|351026648|gb|FQ436301.1|FQ436301
EST:     ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGG                         CTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCTGTAAAG
genomic: ATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGGgtgagtagtt ... tttctgacagCTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtcctgtaatttttctcatacatgcaacacaattgttttcatttctgacagCTTGCTATGAGGGAAGCATGCAAATATGTGGATGAAAAATTGGCCGTAAAG
                                    ttgttttcatttct  CT-rich tract
          taatttttctcata  TA-rich tract