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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaatcataatggatcttctttttgttggtgttcttgtataaataattttttcagtgaattatttatattgatgccactgggactagtgaattctccaagaagctggactttctatgcgcttaatggcattttttttatattctagtgcttttataccatctaaaggaagggaatggctatctttttgcagGTTCTTTTCTCAGACATAAATGCTTATGAG

Basic information

species Vitis vinifera
transcript Vv15s0021g00830.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os10g41710.1 (Oryza sativa), 3'ss of exon 4
gtaatgaatcataatggatcttctttttgttggtgttcttgtataaataattttttcagtgaattatttatattgatgccactgggactagtgaattctccaagaagctggactttctatgcgcttaatggcattttttttatattctagtgcttttataccatctaaaggaagggaa-tggctatctttttgcagGTTCTTTTCTCAGACATAAATGCTTATGAG
                                                                                           |  |   ||     |||||  |   || ||  |||  |   ||    || | ||   | |   |  | |  ||  |  |    ||   ||  | |   |||||||||||| ||||| ||||||||||||||||||
------------------------------------------------------------------------------------------ctttacagtcggcacagctgttccgcctgtgttctttgt---atcgcattaaaatgtcaat---tgaacatgattcactgacctggttctgcttgtgactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG

upper sequence: Vv15s0021g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G050961_T05 (Zea mays), 3'ss of exon 4
gtaatgaatcataatggatcttctttttgttggtgttcttgtataaataattttttcagtgaattatttatattgatgccactgggacta-gtgaattctccaagaagctggactttctatgcgcttaatggcattttttttatattctagtgcttttataccatctaaaggaagggaatggctatctttttgcagGTTCTTTTCTCAGACATAAATGCTTATGAG
                                                                                | ||  |||  || ||||||   ||       | ||| | ||    || |   | ||||    || |  | ||||  ||    || || |  |  | ||    | |    ||||||||||| ||||||||||| ||||||||||||
------------------------------------------------------------------------------aaattgttactgtgtcaattcttacagtttgcatagtttgt-tgaatgtacttttacttttaccgtagtacaatgctcata----atgtagaatactgtaaccagTTTGCACTTGCAGGTTCTCTTCTCAGACATCAATGCTTATGAG

upper sequence: Vv15s0021g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G050961_T01 (Zea mays), 3'ss of exon 4
gtaatgaatcataatggatcttctttttgttggtgttcttgtataaataattttttcagtgaattatttatattgatgccactgggactagtgaattctccaagaagctggactttctatgcgcttaatggcattttttttatattctagtgcttttataccatctaaaggaagggaatggctatctttttgcagGTTCTTTTCTCAGACATAAATGCTTATGAG
                                                                                          || ||||||   ||       | ||| | ||    || |   | ||||    || |  | ||||  ||    || || |  |  | ||    | |    ||||||||||| ||||||||||| ||||||||||||
------------------------------------------------------------------------------------------gtcaattcttacagtttgcatagtttgt-tgaatgtacttttacttttaccgtagtacaatgctcata----atgtagaatactgtaaccagtttgcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattctagtgcttttataccatctaaaggaagggaatggctatctttttgcagGTTCTTTTCTCAGACATAAATGCTTATGAG
                      atctaaa  putative branch site (score: 3)
                                         ctatcttttt  putative PPT
                                          tatcttttt  TA-rich tract