1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtaaatgctttatttgttgatggtttttgtatttcagtatttcaattagctgctagtctagtaatctatactccattattgactcatgtttaaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACATTTTACTAGATTTATGTGGAGGAGTGGCTAATTATGCACAGATGACAG
species | Vitis vinifera |
transcript | Vv14s0219g00120.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACEST: gi|351045861|gb|FQ441046.1|FQ441046
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACEST: gi|351030795|gb|FQ438633.1|FQ438633
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAAATGGATTTAGCEST: gi|110699274|gb|EE076127.1|EE076127
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGC
EST: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACEST: gi|294966259|gb|GW837510.1|GW837510
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACEST: gi|349820300|gb|FQ403916.1|FQ403916
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACEST: gi|349809992|gb|FQ398617.1|FQ398617
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: CACAATACAAGTTGTTATGACAGTCATCAAATATGTTCCGCCG GCCTTTATGAACTTCCCGCCGAAGAGCACAGATGGAATTAGEST: gi|110696243|gb|EE075180.1|EE075180
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAG
EST: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCACAG GCATTTATGAACTTCCGGCGGAAGAGCACTGATGGATTTAGCATTGGCAACEST: gi|110724366|gb|EE100141.1|EE100141
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACEST: gi|34549515|gb|CF517747.1|CF517747
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
EST: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAG GCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
genomic: CACAATACAAGTTGTTATGACGGTCATCAAATATGTTCCGCAGgtcagaattg ... taaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAAC
ttagctgctagtctagtaatctatactccattattgactcatgtttaaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACATTTTACTAGATTTATGTGGAGGAGTGGCTAATTATGCACAGATGACAG
tattgac putative branch site (score: 2)
tcatgtttaaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgctttatttgttgatggtttttgtatttcagtatttcaattagctgctagtctagtaatctatactccattattgactcatgtttaaaatatagGCATTTATGAACTTCCGGCGGAAGAGCACAGATGGATTTAGCATTGGCAACATTTTACTAGATTTATGTGGAGGAGTGGCTAATTATGCACAGATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - -tgatggt
- - - - - - - - - - - - - - - - - - - - - - - -agctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcatgt