1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtattcaggatacttccctatcaactaagatattgctgggattgtggtctatggcattaaaatcaatgtgttcgttgtttgcagCATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTT
species | Vitis vinifera |
transcript | Vv14s0171g00400.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCAAACCCAGCACTACCCTTCGGTTCATCTCTCGGAACATATATGTTG CATTCACAATGTTTGTCGGCATCACATTCCCCGTTCTTTAGTGGCCTTCTGEST: gi|110700407|gb|EE078411.1|EE078411
genomic: TTTCAAACCCAGCACTACCCTTCGGTTCATCTCTCGGAACATATATGTTGgtaagtattc ... ttgtttgcagCATTCACAATGTTTGTCGGCATCACATTCCC-GTTCTTTAGTGGCCTTCTG
EST: TTTCAAACCCAGCACTACCCTTCGGTTCATCTCTCGGAACATATATGTTG CATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGA
genomic: TTTCAAACCCAGCACTACCCTTCGGTTCATCTCTCGGAACATATATGTTGgtaagtattc ... ttgtttgcagCATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGA
atattgctgggattgtggtctatggcattaaaatcaatgtgttcgttgtttgcagCATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTT
attaaaatcaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattcaggatacttccctatcaactaagatattgctgggattgtggtctatggcattaaaatcaatgtgttcgttgtttgcagCATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT