1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagtattcaagatggttgttagtttttcgaagttttcttttcagtaatcatttttcaaatggcaggtcatactgagatgactgacattgtcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTGACATTGAGTTGGTTTCAGAGCTTTGCCACAGGAAGGGAGCACTAGTCT
species | Vitis vinifera |
transcript | Vv14s0108g01110.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAAT GTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTEST: gi|28969813|gb|CB348846.1|CB348846
genomic: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAATgtcagtattc ... tcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTT
EST: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAAT GTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTEST: gi|30128490|gb|CB913829.1|CB913829
genomic: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAATgtcagtattc ... tcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTT
EST: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAAT GTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTEST: gi|110702814|gb|EE079112.1|EE079112
genomic: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAATgtcagtattc ... tcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTT
EST: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAAT GTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTEST: gi|30133528|gb|CB918867.1|CB918867
genomic: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAATgtcagtattc ... tcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTT
EST: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAAT GTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTEST: gi|161714535|gb|FC062985.1|FC062985
genomic: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAATgtcagtattc ... tcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTT
EST: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAAT GTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTT
genomic: TCGACCCTGCTGATACGGAAGCTCTGAAATCTGCACTGGATAAGAACAATgtcagtattc ... tcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTT
taatcatttttcaaatggcaggtcatactgagatgactgacattgtcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTGACATTGAGTTGGTTTCAGAGCTTTGCCACAGGAAGGGAGCACTAGTCT
gactgac putative branch site (score: 2)
atttttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtattcaagatggttgttagtttttcgaagttttcttttcagtaatcatttttcaaatggcaggtcatactgagatgactgacattgtcacatgcagGTTACACTTTTCTTCACTGAGTCTCCGACCAATCCATTTCTCAGATGTGTTGACATTGAGTTGGTTTCAGAGCTTTGCCACAGGAAGGGAGCACTAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA