1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatgtatatcatcttcatggtcattattgtcatttattattagtgaaatgcagttggattgaatcagttgaataaaacaactcgttttttatttttgaagGAATGGGCAGGAGAAACTTATCCACCTTGGGCACATGGTCCTGGTTACGTGGTGTCAAATGACATAGCAAAAACAGTGTACAAGAGACACAAGGAAGGTC
species | Vitis vinifera |
transcript | Vv14s0108g00890.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTCGACCTCATCGTAGTTCTGACAGTAAATGGTACATCAGCCCTGAG GAATGGGCAGGAGAAACTTATCCACCTTGGGCACATGGTCCTGGTTACGTG
genomic: ATGCTCGACCTCATCGTAGTTCTGACAGTAAATGGTACATCAGCCCTGAGgtagttctca ... atttttgaagGAATGGGCAGGAGAAACTTATCCACCTTGGGCACATGGTCCTGGTTACGTG
aaatgcagttggattgaatcagttgaataaaacaactcgttttttatttttgaagGAATGGGCAGGAGAAACTTATCCACCTTGGGCACATGGTCCTGGTTACGTGGTGTCAAATGACATAGCAAAAACAGTGTACAAGAGACACAAGGAAGGTC
ctcgttttttattttt CT-rich tract
ttttttatttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtatatcatcttcatggtcattattgtcatttattattagtgaaatgcagttggattgaatcagttgaataaaacaactcgttttttatttttgaagGAATGGGCAGGAGAAACTTATCCACCTTGGGCACATGGTCCTGGTTACGTGGTGTCAAATGACATAGCAAAAACAGTGTACAAGAGACACAAGGAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - -catggtc
- - - - - - - - - - - - - - - - - - - - - - - aatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa